Gardnerella vaginalis 409-05: HMPREF0424_0679
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Entry
HMPREF0424_0679 CDS
T01146
Symbol
rrmJ
Name
(GenBank) ribosomal RNA large subunit methyltransferase J
KO
K06442
23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:
2.1.1.226
2.1.1.227
]
Organism
gva
Gardnerella vaginalis 409-05
Brite
KEGG Orthology (KO) [BR:
gva00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gva03009
]
HMPREF0424_0679 (rrmJ)
Enzymes [BR:
gva01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.226 23S rRNA (cytidine1920-2'-O)-methyltransferase
HMPREF0424_0679 (rrmJ)
2.1.1.227 16S rRNA (cytidine1409-2'-O)-methyltransferase
HMPREF0424_0679 (rrmJ)
Ribosome biogenesis [BR:
gva03009
]
Prokaryotic type
rRNA modification factors
16S rRNA modification factors
HMPREF0424_0679 (rrmJ)
23S rRNA modification factors
HMPREF0424_0679 (rrmJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FtsJ
S4
SYY_C-terminal
Methyltransf_23
Methyltransf_11
Methyltransf_25
Motif
Other DBs
NCBI-ProteinID:
ADB13970
LinkDB
All DBs
Position
766711..767514
Genome browser
AA seq
267 aa
AA seq
DB search
MTLNEDLSKLSNSNISQRLDCALVNRGLAESRTTAQRLIRAGVVSVDNRNITKSSFLVNN
SHTITIDESKNTQSCIRYVSRGALKLEGAFEAFSKNGLTTSKSTKALDIGASTGGFCDVL
LQRGVHSVIALDVGHGQLHPKIANNSHVIEMSGVNIRDVYEENLPYKPNLIVSDVSFISL
TFVIPVISRIAQLHADIVLLVKPQFEVGKGNLGKGGIVTDETLRIKALETIKSCANQNGL
KVISSCESPIEGTHGNTEYLLYARYEK
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
atgactttgaatgaggatttaagtaaactttcaaatagcaatatttcacaacgcttagat
tgcgctttggttaatcgtggtttagcagaaagtaggacaactgctcaacgtttaattcgt
gctggcgtagtgagtgttgacaatcgaaatattacgaaatcctcatttttagtaaacaat
tcacatacaataacaatcgacgaatcaaaaaatacgcaatcttgtattagatacgtttct
cgtggagcacttaagttagaaggtgctttcgaagcgttttctaaaaatggtttaactact
tccaaatcaactaaagctctagatataggtgcatcaacgggtggtttttgcgacgttctt
ttgcaaagaggtgttcattctgtaatagctttagatgttggtcatggtcaattgcatcca
aaaatagctaacaattcacatgtaattgaaatgagtggcgtaaatattcgagatgtgtac
gaagagaacttgccatataagccaaatcttatagtttcggatgtttcttttatttctcta
acgtttgttattccagtaatttctagaatagctcaattgcatgcagatattgtgctttta
gttaagccgcaatttgaagtaggaaaaggaaaccttggaaaaggtggaatagtaactgac
gagactttaagaattaaagctttagaaacaataaaaagttgtgcaaatcaaaacggtcta
aaggttatctcctcttgcgaatctcctattgaaggaacgcatggcaatacggagtatctt
ctttatgcgcgttacgagaagtaa
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