Gardnerella vaginalis 409-05: HMPREF0424_0705
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Entry
HMPREF0424_0705 CDS
T01146
Symbol
hup
Name
(GenBank) DNA-binding protein HB1
KO
K03530
DNA-binding protein HU-beta
Organism
gva
Gardnerella vaginalis 409-05
Brite
KEGG Orthology (KO) [BR:
gva00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gva03032
]
HMPREF0424_0705 (hup)
03036 Chromosome and associated proteins [BR:
gva03036
]
HMPREF0424_0705 (hup)
03400 DNA repair and recombination proteins [BR:
gva03400
]
HMPREF0424_0705 (hup)
DNA replication proteins [BR:
gva03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
HMPREF0424_0705 (hup)
Chromosome and associated proteins [BR:
gva03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
HMPREF0424_0705 (hup)
DNA repair and recombination proteins [BR:
gva03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
HMPREF0424_0705 (hup)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_2
HU-DNA_bdg
Motif
Other DBs
NCBI-ProteinID:
ADB13535
LinkDB
All DBs
Position
complement(799382..799663)
Genome browser
AA seq
93 aa
AA seq
DB search
MAYNKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEALQSGEGLKLTGLFSAERVKRAER
TGRNPRTGETIKIPASYGVRISAGSLLKKAVTA
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atggcatacaacaagtctgatctcgtttctaagatcgcacagaagtccaacctgaccaag
gcacaggccgaagccgccgtcaacgcattccaggatgtgttcgttgaggctttacagtcc
ggtgaaggtttgaagcttactggtctgttctccgcagaacgcgtaaagcgtgctgagcgc
actggccgcaacccgcgtaccggtgaaaccatcaagattccagcttcttacggtgtacgt
atttccgctggctccttgttgaagaaggctgttactgcctga
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