Gardnerella vaginalis 409-05: HMPREF0424_0715
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Entry
HMPREF0424_0715 CDS
T01146
Symbol
ung
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
gva
Gardnerella vaginalis 409-05
Pathway
gva03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HMPREF0424_0715 (ung)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gva03400
]
HMPREF0424_0715 (ung)
Enzymes [BR:
gva01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
HMPREF0424_0715 (ung)
DNA repair and recombination proteins [BR:
gva03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HMPREF0424_0715 (ung)
Prokaryotic type
HMPREF0424_0715 (ung)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
ADB13821
LinkDB
All DBs
Position
complement(811250..811966)
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AA seq
238 aa
AA seq
DB search
MNPQNIKPLNELMDPDWAEALKPVEPQIRAMGVFLREQIESGHHILPASHNILRAFSIPL
KSIKVLIVGQDPYPTPGHPVGLSFCTAAKVRPLPKSLINIYKELVNDLGVETPKSGDLTP
WTRQGVMLLNRCLTVEAGKANSHQGKGWEPVTDAAIRALNNRTDCNGNPLPLVAILWGRN
AQSLAPLLTNATLITSAHPSPLSAMRGFFGSHPFSRANQALINMGVSPINWSLDSQEI
NT seq
717 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctcaaaatattaaacccttaaacgagctaatggatcctgattgggctgaagca
ttaaagccagttgagccacaaatacgcgcaatgggagtatttttgcgagagcagatagaa
agcggacatcatattcttcctgctagccacaacattttgcgtgctttttctattccacta
aaaagcattaaagttttaattgttggccaggatccatatccaacgccgggccatccagta
ggcttaagtttttgcacagctgcaaaagtgcgcccactgccaaaaagtctcataaacatt
tataaagaattagtaaacgatttaggtgtagaaactccaaaaagtggagatctaacaccg
tggaccaggcagggtgtgatgcttcttaacagatgtttaactgttgaggccggtaaggca
aatagccaccaaggaaaaggttgggagcctgtaaccgatgcagctattcgagcattaaac
aatagaactgattgcaatggtaatccattgccgcttgtagctattttatggggtcgtaat
gcgcaaagtttggctcctttgctgacgaatgcaactcttattacatcagcgcacccaagc
cctctttctgcaatgcgaggattctttggatcgcatccattttcaagagctaatcaggcc
ttaattaatatgggagtttcgccaattaattggtccctagattctcaagaaatctaa
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