KEGG   Gardnerella vaginalis 409-05: HMPREF0424_0762
Entry
HMPREF0424_0762   CDS       T01146                                 
Symbol
casC
Name
(GenBank) CRISPR system CASCADE complex protein CasC
  KO
K19124  CRISPR system Cascade subunit CasC
Organism
gva  Gardnerella vaginalis 409-05
Brite
KEGG Orthology (KO) [BR:gva00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:gva02048]
    HMPREF0424_0762 (casC)
Prokaryotic defense system [BR:gva02048]
 CRISPR-Cas system
  Type I CRISPR-Cas system
   Subtype I-E factors
    HMPREF0424_0762 (casC)
SSDB
Motif
Pfam: Cas_CT1975 Cas_Cas7
Other DBs
NCBI-ProteinID: ADB14459
LinkDB
Position
865328..866416
AA seq 362 aa
MNSRLFLDIQAIQSVPPCNINRDDAGSPKTAQYGGVTRARVSSQCWKHSMREYFKEHSGD
SNVGMRSKNIVKYVADKIITLKPELSEQEALDLANKTLNNAGFKTKTDKGKIIPVVNVLF
FLGENQANSLAQAAINNVTDKKQLEEILKDNPPIDIALFGRMLADNPSLNEDASSQVAHA
ISTHAVRAEFDYYTAVDDLSVDDNAGAGMLGTIEYNSSTLYRYANVAIHEFSHQLSDNKE
STINALKLFIEAFANAMPTGKVNTFANQTLPQMLVVTLREDRPVNLVSAFEDPVKAKDGY
VSKSIEKLSQEYEKVQKFVHKPLASFYVTMDSSNKEIKLGVEEQSMQQLLDDFSSKVSEL
LQ
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgaactctcgtttattcttagatattcaagcaatccaaagtgttcctccatgcaatatt
aatcgtgatgatgcaggtagcccaaaaactgctcaatatggcggtgtaactagagctaga
gtaagttcccaatgttggaagcactcaatgcgtgaatacttcaaagaacacagcggagat
tccaatgttggaatgcgaagcaaaaatattgttaaatacgttgctgataaaatcattacg
ttaaaaccagaattatctgaacaagaagcattagatttagcaaataaaacgttaaataat
gctggctttaaaactaaaacagataagggtaaaataattcctgtagtaaatgttctattt
ttcttaggtgaaaatcaagcgaattctctagcacaagcagcaatcaataatgttactgac
aagaagcagctggaagaaatattgaaagataatccacctattgatattgcgttattcggt
cgtatgcttgcagacaatccatcccttaatgaagatgcttcttctcaagttgctcacgca
atttccactcacgctgttcgcgctgaatttgattactatactgctgttgatgatttatct
gtggatgataatgctggagctggaatgctgggcacaatagaatataattcttcaacgctg
tatcgttatgcaaatgttgcaatacatgaatttagtcatcagttgagcgataacaaagaa
tctacaattaatgctcttaagctttttattgaagctttcgctaatgcaatgcctactgga
aaagtaaatacttttgcgaatcaaactttgccgcaaatgcttgtagtgactttgagagag
gacagaccagtgaatttagttagcgcatttgaagatccagtaaaagcaaaagacggatat
gtttcaaaatctattgagaaactatctcaagaatacgagaaagttcaaaaatttgttcat
aagccgcttgcatcattctatgtgacaatggattcttcaaataaggagattaaattagga
gtggaagagcaaagtatgcagcaattattggatgatttttcttccaaagtctcagaattg
cttcagtaa

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