Gardnerella vaginalis 409-05: HMPREF0424_0766
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Entry
HMPREF0424_0766 CDS
T01146
Symbol
cas2
Name
(GenBank) CRISPR-associated endoribonuclease Cas2
KO
K09951
CRISPR-associated protein Cas2
Organism
gva
Gardnerella vaginalis 409-05
Brite
KEGG Orthology (KO) [BR:
gva00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02048 Prokaryotic defense system [BR:
gva02048
]
HMPREF0424_0766 (cas2)
Prokaryotic defense system [BR:
gva02048
]
CRISPR-Cas system
Universal Cas proteins
HMPREF0424_0766 (cas2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cas_Cas2CT1978
RNase_T
Rv2179c-like
RNase_H_2
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
ADB13541
LinkDB
All DBs
Position
868977..870056
Genome browser
AA seq
359 aa
AA seq
DB search
MPLTVITMTNCPLSLRGDLTKWMQEIASGVYVGNFNSRVREELWKRIEDSVGNGAVTMSF
SSRNEIGYDFKTIHSHREVVYSDGLPLVRIPTVDTLENDIKHGFSDAAHFHNAKKFSNIR
RKNINTPSSTIENNLANENISYLSYDNASQTAKFATDNEEITCTDYWKDFIDKIDKNFVV
IDCETTGLNSKVDKIIEIGAVKFIDGKIEEFQKLININCDSVSNFNKNNFIPNEIIELTG
ITSNMLESYGVRLDLALKEFINFVERLPVLGYNVQFDMSFLNSALSSLDERFDHSLSINK
IFDISRFVKKEKKFLKNYQLKTVLHEYNIAESVPHRALLDARLTAHLVFNLTELLKFLA
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atgccgttaactgtgattacgatgacgaactgtccactatctttaagaggtgatttaact
aagtggatgcaagaaatagcatcaggcgtttacgtcggcaattttaatagtcgagtccga
gaagaattatggaagcgtatagaagatagtgttggcaatggtgctgtaacaatgagcttt
tcttctagaaatgaaattggctatgattttaaaactatccattcgcatcgtgaagtggtt
tattcagatggattgcctctagtacgtattccaacagttgatacactagaaaacgatatt
aaacatggatttagcgatgcagcacattttcataatgcaaagaaattttcaaatataagg
cgtaaaaatattaatactccttctagcacaattgaaaataatcttgctaatgaaaatatt
agttatctaagttatgataatgcttctcaaactgcaaaatttgctacggataatgaagag
ataacttgtaccgattactggaaggattttatagataaaatagataaaaattttgttgta
atagattgcgaaactacaggtttaaatagcaaagttgataaaatcattgaaattggggcc
gttaagttcattgatggaaaaattgaagaattccagaaattaataaatattaattgcgat
agcgttagtaattttaacaaaaataattttattcctaatgaaattattgagttaactggt
attacatccaacatgcttgaatcttatggtgtcagattagatttagcattaaaagaattt
attaattttgtcgaaagattacctgtacttggatataacgtacaatttgatatgtcattt
ttaaattctgctttatcttcattagatgaaagatttgatcattctctttcaattaacaaa
atttttgatatttctcgttttgtaaagaaagaaaagaaatttttaaaaaactaccaatta
aaaacagtgctgcacgaatacaacattgctgaatctgttccacatagagctcttctggat
gctagactaacagcgcatcttgtttttaatttgacagaattgttaaaatttcttgcataa
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