KEGG   Gardnerella vaginalis 409-05: HMPREF0424_0871
Entry
HMPREF0424_0871   CDS       T01146                                 
Name
(GenBank) hypothetical protein
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
gva  Gardnerella vaginalis 409-05
Brite
KEGG Orthology (KO) [BR:gva00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:gva02048]
    HMPREF0424_0871
Enzymes [BR:gva01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     HMPREF0424_0871
Prokaryotic defense system [BR:gva02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   HMPREF0424_0871
SSDB
Motif
Pfam: T1RH-like_C T1R_D3-like Adcy_cons_dom SWI2_SNF2 VAPB_antitox
Other DBs
NCBI-ProteinID: ADB13739
LinkDB
Position
complement(984221..986119)
AA seq 632 aa
MDQAVADGLTVSIKYHPRIAKVLLDKTKAKEIENYYKKCADDGATYDDIEASKRAMSSME
VILGEPSRLERLAIDIHDHYISSCDSDPDRIQKAMIVCSSRKIAYSLLLKFKDKYPEWFE
EKKTPDGVTATDEELKELKPMPFMAMVSSVGSNDEAEMYNYLGGVKNDKRCEELDAAFKQ
EKSNFHIVIVVDMWITGFDVPSLTYLYNDKPLKKHLLIQTISRVNRKYPGKEYGMVIDYI
GIRDNMREAMKVYGGDTSVAPTSDDVEQATSAFREEIEILKALFTDYDLAPFLNTKCDPV
ERYKLLSKAAEYVFTSAQVLQTEGNGKTNQVSFKTYFLKSVKRMRSAFDICQPSGNLGEE
ESALAQCFMAIAGFVRKMSGTSDVDAETMNLVVSKMVEEALKYNKVESVLESGEEEDIFS
PEYFEKLSDVEMPATKLELLIKMLRKQIKEYGRVNQLAAKSFQEMIEKTIDEYHERRKHL
TAEEAGATQEAASEDIIKAATEQALVILRQMNENRESFRKIGLTFEEKAFYDILIALRDQ
YKFEYGIDKEVNGVVINDKCKTLAKKVKEIIDTESSFVDWLNNQNVRNQLKLKIKICLVK
NGYPPQYSPEVFTKVMEQVENFEEHSETTSES
NT seq 1899 nt   +upstreamnt  +downstreamnt
atggatcaggcggtcgcagatggactaactgtttctattaagtatcatcctcgtattgcc
aaggtgttacttgataagaccaaagctaaagaaattgaaaattactataaaaagtgtgcc
gatgatggtgcaacgtatgatgatattgaagccagtaaacgtgcaatgagttctatggaa
gttatccttggcgagccttctcgcttggagaggcttgctatagatattcatgaccattat
atttcatcttgtgatagtgacccagatagaattcagaaagcaatgattgtctgctctagc
agaaaaattgcatattcacttcttttgaaattcaaggataaatatccggaatggtttgaa
gaaaagaaaactcctgacggagttactgcaacagatgaagaacttaaagaattaaagcct
atgccatttatggctatggtatcgagtgttggaagtaatgatgaagctgagatgtataac
tatcttggtggagttaaaaatgataaacgttgcgaagaactggatgcagcctttaaacag
gaaaagtctaatttccatattgttatcgtagttgatatgtggattacgggatttgatgtt
ccgtcacttacatatttatataacgataagcctttgaagaagcacttgctgattcaaact
atcagtcgtgtaaacagaaaatatcccggcaaagaatatggtatggttatcgactatatt
ggcattcgcgataatatgcgtgaggccatgaaggtttacggtggtgatacatcagttgct
cccacatcggatgacgttgagcaggctacctctgcattcagggaggagattgaaatactt
aaagcactgtttacagattatgacttagctccattccttaatacgaaatgtgaccctgtt
gaaagatataaattactttccaaagcggctgagtatgtctttacatcagcacaggtcttg
cagacagaaggaaacggaaaaactaatcaggtctcatttaagacatatttcttaaagtct
gttaagagaatgagaagtgcttttgatatttgccaaccttctggaaatctgggcgaagaa
gaatctgcgcttgcacagtgctttatggctatagcaggcttcgttcgtaaaatgagtgga
accagcgatgttgatgctgaaactatgaatcttgtggtatcaaagatggttgaagaggca
ttaaaatacaataaggtagaaagtgttcttgaaagtggcgaggaagaagatatcttctct
cctgaatactttgaaaaattatcagatgtagaaatgcctgctacaaagttagaattactt
atcaaaatgctccgtaagcaaataaaggaatatggcagggttaaccaattagcagcgaaa
tctttccaagaaatgattgaaaagactattgatgagtaccatgaaagacgtaagcacctt
actgctgaagaagccggggcaacacaggaagctgcctcagaagatattattaaggctgca
actgaacaagctttagtgatacttcgtcagatgaacgaaaatcgtgagagtttccgtaaa
ataggattaacctttgaagaaaaggcattctatgatattttgattgctcttcgtgaccag
tataagtttgaatatggcattgacaaagaagttaacggtgttgtgataaacgataaatgc
aagacacttgctaaaaaagttaaggaaataatagataccgagtcttcatttgtggactgg
ctcaacaatcagaatgtgcgtaatcagttaaaattgaagataaagatttgtttggttaag
aacggctatccgccacagtatagtcctgaagtgttcacaaaggtgatggagcaggtagaa
aattttgaggagcattctgaaacaacttcagaaagttag

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