Gardnerella vaginalis 409-05: HMPREF0424_0883
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Entry
HMPREF0424_0883 CDS
T01146
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
gva
Gardnerella vaginalis 409-05
Brite
KEGG Orthology (KO) [BR:
gva00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gva03016
]
HMPREF0424_0883
Enzymes [BR:
gva01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
HMPREF0424_0883
Transfer RNA biogenesis [BR:
gva03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HMPREF0424_0883
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
ADB14104
LinkDB
All DBs
Position
complement(1002336..1003766)
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AA seq
476 aa
AA seq
DB search
MNEEPKLLKEPREGVPEVIDTLEAYKDYCSLLEAGSGPLAADAERASGFRYSHEDWLIQF
KRKGAGIGLLDPIELTKLGADWNEFNKAVGDVPWIIHDSMQDLPGFFNIGLRPLALFDTE
IAAKLLGRKRFGLSSVTEYYLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELEEV
MRVELKKQGKLSWAEEEFKHLLSKGAQKKAPHPRPWLKISHISVLMHDRVGLVIAKALWQ
KRDALAREYDIAPTLLLSDAAIIEAGKRKPSNARAFRAIRSLNERVRMHTGSEQDKMFER
YAPIQRKVKPSIWKNVIENAILRAKSGETAMDDVHPVLPNGAIQLNSRESRKTNVLKSTD
TDESQGSNDCQDCHDLSDSQYLQDMQDSQSAPRSMKYWREHHPKRYERLQRVKAELNQIS
EYTHTPAEIIIKPQIIRNLCWHDDAQDIDVKTFLSEHGAREWQTRLVAESVTRAIM
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgaggaaccaaagcttttaaaagagcctagagaaggagttccagaagtcattgat
acgcttgaagcatataaagattattgcagcttgttggaggcaggctccggtcctttagct
gcagacgctgagcgagcttccggttttcgctacagtcatgaagattggttgattcagttc
aaacgtaagggtgcaggaattggattattagatcctatagaacttacaaaacttggagct
gattggaacgaatttaacaaggcagtaggggatgtgccttggattattcacgattcgatg
caagatttgccaggatttttcaatattggtttgcgcccacttgcattatttgataccgaa
atcgcagctaaattacttggcagaaagcgctttggtttaagctctgtaactgaatattat
ttgggtcttactcttgcaaaagaacattctgcagcagattggtcttaccgcccacttcct
agagattggcgaaattacgcagctttagatgttgaattacttattgagctagaagaagta
atgcgcgtcgaacttaaaaagcaaggtaaactttcttgggcggaagaagaatttaaacac
ttacttagtaagggtgcacaaaagaaagctccgcatccacgtccatggcttaaaatatcg
catattagcgtacttatgcacgatcgtgttggtttagttattgcgaaagcattgtggcaa
aagcgagatgctttagcgcgtgaatatgatattgcgccaactctgctactttctgacgct
gcgattattgaagctggtaagcgtaaacctagtaatgcgcgtgcgtttcgtgctattcgt
tctttgaatgagcgagtgcgaatgcacactggcagtgagcaagacaaaatgttcgagcgt
tacgctccaattcagcgcaaagttaaaccatctatttggaaaaacgttatagagaatgct
attttgcgcgctaaatctggtgaaacggctatggatgatgtgcatccagtattaccgaat
ggagctattcaacttaattcgcgcgaatctcgtaaaacgaacgtacttaagtcaacagat
actgacgagtcgcaaggttctaatgattgtcaggattgccatgatttatcggattcgcag
tacttgcaggatatgcaagattcccaaagcgctcctagatctatgaaatattggcgagaa
catcaccctaagcgttacgagcgtttacaaagagtaaaagctgagttaaatcaaatttct
gaatacactcatactcctgcagaaattattatcaaaccacagattattcgtaatctttgc
tggcatgatgatgcgcaagatattgatgttaaaacattcttaagtgagcatggtgctcgc
gaatggcaaacccgattggtagctgagtccgtaactcgcgctatcatgtaa
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