Gardnerella vaginalis 409-05: HMPREF0424_0912
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Entry
HMPREF0424_0912 CDS
T01146
Name
(GenBank) putative primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gva
Gardnerella vaginalis 409-05
Pathway
gva03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HMPREF0424_0912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gva03400
]
HMPREF0424_0912
Enzymes [BR:
gva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMPREF0424_0912
DNA repair and recombination proteins [BR:
gva03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HMPREF0424_0912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_3primeBD
Motif
Other DBs
NCBI-ProteinID:
ADB13787
LinkDB
All DBs
Position
complement(1041328..1043748)
Genome browser
AA seq
806 aa
AA seq
DB search
MAEQPSLDGLARKTRRKRNAVSLVPANECPIAHVMLDVQASHLGRTFDYLISQDQDESAQ
PGAFVRVRFGAQKLTGVIWSRSSHTDTPHTALRFLERVFPSDVLLSKSLRDDIDAIAKAY
GGTSSNILRLAVPQRVARVEHEEVFDNIRLQRRKQWRENLKKRLQNDNNTNPGYATTSRM
IYDYENANILYNALIKKSIDASFSENKTENQLVKQAENNSSQSFIVDALPGSCRLAQDLA
WMIVTALSACKQAVVVLPTLREVNDVMRALMVYGLKPYKRVSENHRGFSAGSFDGDVARL
CAADPPADRYRAWRAIASGIVPCVLGTRAAMYAPVEGDALFAIVEDCAYQYADGMMPYAQ
ARGVMRLRAKRHGGVFVSMSYSRSALSQSEVDCYMSNAQDAQGEQSVQTTKVIQTTQSAK
TAETISGSSIPVSASRLAREKLVPWVRWLNREALLKLADPSIGARIPHSAVRAINDALSD
GKPVLLSIAQDGVTQSAICSSCKRQARCRRCTGPLDVANSQQTARCSWCGASAINWSCSN
CGSSNMRVIQVGAAGVAEELSKLFRNVPIIISSQHQPNGIIQCIDEKPVIVVATPGCEPR
VQTQDANCNGEYGVVAILDTWVSLYASGLDARIDTLNSWMKASALCAPRARGGSVLLIGE
TYPVLARALTLWDTTQLSCNELSERAQAILPPCVTAACVWGARDAVMRALENIGAMQENL
GCESSQDADFSAISPLLGIVPMHPPVTDRYQHFDDIYDRVKAVVRVPLYLRQELVNRLHK
EVARHVATRAAGELRFCVDPKDLLAY
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcagagcaaccttcgctagacggcttagcgcgtaaaacaagacgtaagcgcaatgct
gtttctctagtgcctgctaatgaatgccctattgcgcatgtgatgcttgatgttcaagct
tcacatttaggtcgtacttttgattacttgatatcgcaagatcaagatgaatctgctcag
cctggggcgtttgtacgcgttcgttttggagcacaaaagctcactggagttatttggtct
cgttcttcgcatacagacacccctcatactgctttaagatttttagagcgcgtgtttcct
tcagatgttttgctttctaaatctttgcgagacgatattgacgccatagctaaagcttat
ggtggaactagctcaaatattttgcgtcttgctgtgcctcaacgcgtagctcgtgttgag
catgaggaagtttttgacaacatacgcttgcaacgcagaaaacagtggcgtgaaaatctt
aagaagcgtttgcaaaacgataacaatacaaacccaggttacgctacaacttctcgcatg
atttatgattacgaaaatgcaaatattttatacaatgcattaatcaaaaaatctattgac
gcaagttttagtgaaaataaaacagaaaatcaattagtcaagcaagcagaaaataattct
tctcaatcttttattgtagacgctttaccaggttcttgccgacttgcacaagatttagcg
tggatgattgtcactgctttaagcgcgtgtaagcaagctgttgtagttttgccgacgcta
agagaagtaaatgatgtaatgcgcgcgctaatggtttacggattaaagccatataagcgc
gtcagtgagaatcatcgtggtttttctgctggaagttttgatggcgatgttgctcgactt
tgtgctgcggatcctccagctgatagatatagagcttggcgtgcaatcgcgtccggaata
gttccttgcgttcttggcactagagctgcaatgtatgctccagttgagggagatgcttta
tttgcgattgttgaagattgcgcgtaccaatatgctgatggcatgatgccgtatgctcaa
gcgcgtggcgttatgcggcttcgtgcgaaaaggcatggcggcgtatttgtgtcaatgtcg
tattccagaagcgcgcttagtcaaagtgaagtagactgctatatgtcgaatgcgcaagat
gcgcaaggtgagcaatccgttcaaactactaaagttattcaaactactcaatctgctaaa
actgctgaaacaataagcggatctagcatccctgtaagtgcgagtagacttgctcgcgaa
aagttagttccgtgggttcgttggcttaatcgtgaagctttattgaaattagctgaccca
agtattggcgctcgcataccgcatagcgcagtaagagctattaatgatgctctttcggat
ggtaagcctgtgctgctttctattgcgcaagatggcgtgacgcaatcggctatatgctct
tcttgcaaacgtcaagcgcgctgtagacgatgtaccgggcctctcgatgttgcaaatagt
cagcaaacagcacgttgctcgtggtgtggtgctagtgcaataaattggtcttgttctaat
tgtggcagtagcaatatgcgagttatacaagttggcgctgctggtgttgcagaagaatta
tctaaactatttcgcaacgtgcctattattatttcgtcacaacaccaaccgaacggaatt
atccagtgtattgatgaaaaacctgtaattgttgttgcaactcctggatgtgagcctcgc
gtacaaacgcaagacgcaaattgtaacggagaatatggtgttgtagcaatactcgatacg
tgggtaagtttgtacgcttcggggcttgatgcgcgaatagatacacttaattcgtggatg
aaagcttctgctttatgtgctcctagagcgcgcggaggaagtgtgcttttgattggcgaa
acgtatcctgttcttgcgcgtgcgcttacattgtgggatacgactcaactttcttgcaat
gagctttcagaaagagctcaagcaatattgccgccttgtgtaactgcagcatgcgtatgg
ggtgctcgtgatgcggttatgcgtgcgcttgaaaacattggtgcaatgcaagaaaatctt
gggtgcgaaagtagtcaagatgctgatttttcagcaatttctccattattaggaattgtt
ccaatgcatccgcctgttacagacagataccagcattttgacgatatttacgaccgtgta
aaagctgtagtaagagttccgctttatttaagacaagaattagtgaaccgattgcacaag
gaagtagctcgtcacgtagcaacacgtgctgcaggagagttgcgtttttgtgttgatcca
aaagatttattagcgtactaa
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