Gardnerella vaginalis 409-05: HMPREF0424_0931
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Entry
HMPREF0424_0931 CDS
T01146
Name
(GenBank) LPXTG-motif cell wall anchor domain protein
Organism
gva
Gardnerella vaginalis 409-05
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FIVAR
Motif
Other DBs
NCBI-ProteinID:
ADB13899
LinkDB
All DBs
Position
complement(1064361..1071290)
Genome browser
AA seq
2309 aa
AA seq
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MINSNSGKHARKVTLDAAVSNAIAKAVDARKVAAFTVGAAGVLAGASFAFGATPAMAAEV
SGTPDTKPDVAQTPVTAGENAGTGKKAEAGDKNQTEANKEAGYKAENTNKQAEQKSENTV
NTDGTENKSTVVKIRGKRSVDNPPSGHTATVQDRASGGSAGQDPNKINPDTTDTSNTKID
INENNAETMPNAYAWGSSDNTYSVDGEKHTVTFHFAAPKDGSKITSIAIFPARTNGFNNA
KSEKGIDFYSKDQNKHQAYSGEYTFTPNNDGSADLKMTTLFRDGNLNGGAEKYVASRSIF
VYVTKDGSSTETIAYKTNVFRAVTLVPPKTSGSVVLKYNQELTPEKVQAAITEAGNVNTE
RSDKKSVNDQLSGAFTQNINVKSDDAYDKTTFNAINTETSAQGATDKTYVAGAKTLNTYM
VTDLGFKSQAIPLTVARYDDRIDKPIVEDPTNVSTEVKEDIKKKLAQLNHIAQDRVTIDD
NGTVTINFDGVDAKDAPKIALSDLVLKQLKEADVNVPTDDKAVFVANPLDYSDAEIKSIK
KAIYEANKNNDKLGLSDTDYENQISLSYLTGNLTATGSANTGISNGQAENKITVKIKTDK
AVAEFKSDVKASKLTKLPNIRTDYNVSWTADKIDGRDTDEGLSWSEDKKTIIYRYDPTAA
KEFDTNKILNLLKAKPKNSNSGLRDLTGGEELDHEGASGKPQKSHVGYVLKGDQPTTELS
LGNMSGAYWQYKQNVSNSGVDLGDAESNAGSYSWDEDAKPVVVAAKQDKVYKARLFVLPY
GMTMYRNIYIENGKNPGNTTKAINVIFVPQTNHKTSDLKTSVGKHKTIAVEGKDVPTDSA
YYNASDKVKSEYDDALKVAKALYEQVKDKKESDLTEKQKADIDNATIKLDKARKALDGTK
TDKAGLDKSITEDGKPAQGQTPASGTQATDRYKNVTEPDFKKADGSDDTDRNNAAKEAKK
AYDKALEEAKTLNADENATQKAVDDAKAKLDAAREKLNEFTTNKDELNNAIAQHGKVNTG
DATKQGDEKLKTADPTYQNSTPEQRKAYDDAVAQADKVSKDPNASQKEVNKAIDDLKKAK
AVLDANATDKAPLDAAVQKSFDNPDPNDASKQSVFYKNAAAKKDTDPAAKKAVEDYDKAL
KKAKEVLADKNATKKDVEDAKKALEDAEAALHADTYQTKKTDLAQALADNFSGYLMPAYF
NAFDKAQAEGKDSQAAKDFKAYNDAYHAAKDLMNEINKPNSTVTQDQADKVKNQLIEARK
LIDTYATDTSRLSAAALNDIAIQNSPAYKNVSADDASEEAKEAKKKYDAAVDKLHKALNN
QLPKDKANGQDIPDSNIPAKDGDLNNKDYLKDIQAHKNGEPLNRDVDAIIKEMNDAAAEL
NKFATKTDELIKSINEDVTTHPSPAFKNASQPSYKNDDGSDNTDKNNAANKAASDYGEAL
NKAKDLLKKPDATQKEVNDALKKLDDARKELDKYNTDTTKLAESVKKHGSTEGPAPTEGT
QTSDAYRNASDPHFMKEQDGKLVPDDDKNKKAAEDKKAYDEALTKAQELLKKHDDKDTPQ
DAKPTQKEIDDALKTLDEARKKLEDNYKTVTTDLEKEINKSTPEGAPAVTEDDFENTPEF
KNAKAKTSDGNENADVTAYKTALANARKLVSDANDASKKNSERPTQKQINEALDALKAAK
KQIEDNYKTNLEPLTSAKDFAGGDFKKTPEYQNAVAKKDAGDQGATQALGEDGKDTGFDN
ILKKVAEKLNDEDWKKKATQKQVNALLKQLQDAQEKIAKDYKTDAIKLENEVGDKDQDGK
PVTPPFEASVAYKNALEKAKAESKEDADKDTSATKKLAAYAEKLAKANELIEKVKNPDPN
AKPEDRPTQKQVDDALAALKQAKKDIDDNFKTKVDKLQNEVDDKNEDGTARTPKFEESTE
FANLQGKTKDGKKPDDLVAYEQALAKAKELIDKNDGKVKNDQGQEVDVPKDQLPSQKEVD
EALKNLKEIKDKITKNYVTSPHDLQEEVDKSKGGDTDTRTDVFENTPEFKNATAKGDDAA
KKALDDYDKKLKAAKDLLDKFDRTTGKPKTDLPDGTKVPTQKQLDDALKDLQAAKKKIAD
DYKTDPSKLKTEADADAKFRDSVFFMIGMTEDIDAYNKALAEANSVLKDPNATQAEVDAA
LKKLQAAKYKINHPFGIGSGVGSGSGYDADASDSQSASVDKTALRVEVNNSEADSSAASK
ANTAAARAYVKALAEAKRVLADKNATQAQVDAALRNLKAAKAALRNASGNAGGLAKTGAA
TGLFASLAAIFSGLGAAGVASRRRKHSNE
NT seq
6930 nt
NT seq
+upstream
nt +downstream
nt
atgataaattcaaattccggaaagcacgcacgcaaggttacattggatgctgcagtaagt
aacgcgattgcgaaggctgtggatgctcgcaaggtggcggcgtttacggttggcgctgca
ggcgtgttagctggtgcgtcgttcgcttttggtgcaactccggcaatggcggcggaggtg
agtggtactcctgatactaagccggatgtagctcagacgcctgtgactgctggtgagaat
gctgggactggtaagaaggctgaagctggcgataagaatcagactgaagctaataaagag
gctgggtataaggctgagaataccaataagcaggctgagcagaaatccgagaatactgta
aatactgatggtactgaaaataaatcgactgttgtaaagattcgtggtaagcgctcggta
gataatccgccgtctggacatactgcgactgttcaagatcgcgcttctggtggttcagca
ggtcaagatcctaataaaattaatccagacacaacggatacctctaataccaaaatcgat
attaacgagaataacgctgaaactatgccaaatgcgtatgcttggggaagctcagacaac
acgtatagtgtagatggcgaaaagcatactgttactttccactttgcagcaccaaaagat
ggtagcaagattaccagtattgctattttccctgctaggacaaatggtttcaataatgca
aaaagtgagaaaggtattgatttttactcgaaagatcaaaacaaacaccaagcttattct
ggtgaatatacatttactcctaataacgatggatctgctgatcttaagatgacaactctt
ttcagagatggcaaccttaatggcggcgctgagaagtatgtagccagtcgctctattttc
gtgtacgtaactaaagatggtagtagcacagaaactattgcatataaaacaaacgtattc
cgcgctgtaacgcttgttccgccaaagacttctggctctgtggtgcttaagtataaccaa
gagcttactcctgaaaaggttcaagcagcaattactgaagctggcaatgttaatactgag
cgtagcgataaaaagtcggtaaatgatcagctttctggagcgtttacgcaaaatattaac
gtaaagtctgatgatgcttacgacaagactacatttaatgctattaatactgaaacctca
gctcaaggcgcaacggataagacttacgtagctggcgcgaagacgcttaacacctatatg
gttacggatttgggctttaagtcgcaagctattccgcttacggttgcgcgctatgatgat
cgtattgacaagccgattgttgaagatccaactaatgtttcgactgaagttaaggaagat
attaagaagaagcttgcacagcttaaccacattgctcaagacagggtcaccattgacgat
aacggcacagtcaccatcaacttcgatggtgttgacgctaaggacgctcctaagattgca
ctcagtgaccttgttttgaagcagctcaaggaagcggatgttaatgttccaactgacgat
aaagcagtctttgtggctaacccactcgattactccgatgctgagattaagagtattaag
aaggctatttacgaagctaacaagaacaacgataagcttggtttaagcgatactgactac
gagaaccagatttcgctttcttaccttacaggcaatcttactgcaactggtagtgcaaat
actggtatctcgaacggtcaggcggaaaacaagattaccgttaagatcaagaccgataag
gcagttgccgagtttaagtctgatgtaaaggcgagtaagcttacaaagcttccaaacatt
cgtacggattacaacgtttcgtggactgcagacaagattgatggtcgtgatacagacgag
ggtctttcttggagcgaagataagaagacaattatctaccgctacgatccaacggctgcg
aaagagtttgatacaaataagattcttaatttgctgaaagctaagccaaagaatagtaat
tctggtttgcgcgatcttacaggcggcgaggaacttgaccatgaaggtgctagcggaaaa
ccgcagaagtcgcacgtgggctacgtgcttaaaggtgaccagcctacaactgagttgtcg
ctcggtaatatgagcggtgcttattggcaatataagcagaatgtttcgaattctggcgtg
gacctcggcgatgcagagtcgaatgcgggatcgtattcctgggatgaagacgctaagcct
gtagtagttgctgctaaacaagacaaggtatataaagcgcgcctgtttgttttgccgtat
ggaatgacgatgtacagaaatatttacatcgaaaatggcaaaaaccctggcaacaccacg
aaggcaattaacgttatctttgtgccgcagacgaatcataagacaagtgatttgaagacg
tcggttggcaagcacaagactattgctgttgagggcaaagatgttcctaccgattctgcg
tactacaacgcgtctgacaaggtaaagagtgaatacgatgatgcactcaaagttgctaaa
gctttgtacgagcaagttaaggataaaaaagagtctgaccttactgagaagcaaaaagcc
gatattgacaatgcgactattaagttagataaggctcgcaaagcccttgatggcactaag
accgacaaggctggattggataagtcgataaccgaagatggtaagcctgcgcaaggccaa
actcctgcgtctggaacgcaagcaactgacagatataagaacgttactgaaccagacttt
aagaaggctgatggttctgatgataccgacaggaacaatgcagctaaagaggctaagaag
gcttacgacaaggctcttgaagaagctaagacgttaaatgcagacgaaaacgccacgcag
aaggccgttgacgacgcgaaggcgaaactcgacgctgcgcgcgaaaagctgaacgaattt
accaccaacaaagatgagttgaataatgccatcgctcagcatggtaaggtaaacacgggc
gatgcgactaagcaaggtgacgaaaaactcaagaccgccgacccaacctaccaaaactct
actcctgagcagcgcaaagcttacgacgacgctgtagcgcaggcagacaaggtttccaag
gatccaaacgcttctcaaaaggaagtaaacaaggctattgatgatcttaagaaggctaaa
gcggttctcgacgctaacgcaaccgacaaagctcctttggatgctgctgtgcaaaagagc
ttcgataaccccgatccaaacgatgccagcaaacaaagtgtcttctacaagaacgccgct
gcgaagaaagacaccgaccctgctgctaaaaaggctgttgaggactacgacaaagcccta
aagaaagccaaggaagttctcgcagacaaaaacgccaccaagaaagacgttgaggacgct
aagaaagcgcttgaagacgctgaagcagcacttcatgctgatacctatcaaacaaagaag
actgatcttgctcaagcgcttgcagacaacttcagtggttatttgatgccagcgtatttc
aatgcctttgataaggcacaagctgagggcaaagattctcaagctgccaaggactttaaa
gcctataacgatgcgtaccacgctgcaaaagatttgatgaatgagattaataagcctaat
agtacggtaacgcaagaccaggctgataaggttaagaatcagcttattgaagctcgtaaa
ctcatagatacttacgcaaccgacaccagtagactttcggcggctgcattaaatgatatt
gccatacaaaacagccctgcatacaagaatgtatccgcagatgatgcgagcgaagaagca
aaagaagctaaaaagaagtatgacgccgcagtagataaactgcacaaggcgctcaacaac
caattaccgaaagataaagcaaacggccaggatattcctgatagcaatatccctgcgaaa
gatggcgaccttaataataaggactacctgaaagatattcaggcgcacaagaacggtgag
ccgcttaatagggatgttgacgcaatcattaaggaaatgaacgacgcagctgctgagttg
aacaagtttgcaaccaagaccgatgagctgattaagtccattaacgaggacgtaaccacg
catccaagcccagcttttaagaacgcctctcagccaagctacaaaaacgatgatggttct
gacaataccgacaagaacaatgctgctaataaagctgctagcgattatggtgaggctctc
aacaaggcgaaagacttgctcaagaaacctgatgcaacgcagaaggaagtcaatgatgcg
ttgaagaagcttgacgacgctcgcaaagagcttgacaagtacaacaccgacaccaccaag
cttgcggaaagcgtaaaaaagcacggttctacagagggtcctgcgcctacggaaggcacg
caaacttctgatgcgtatcgtaatgcgtctgatcctcacttcatgaaggagcaggacggc
aagcttgttccggatgatgacaagaacaaaaaggctgccgaagataagaaggcgtatgat
gaagctttaacaaaagctcaggagcttttgaagaagcatgatgataaagacacgccgcaa
gatgcaaagccaacgcaaaaagaaatcgacgacgcgctgaagaccctcgatgaagctcgt
aagaagcttgaggacaactataagactgttactactgatcttgagaaagaaattaacaag
tctactccggagggtgctcctgctgttactgaagacgacttcgagaatacgccagagttc
aagaatgctaaagctaagacaagcgatggtaatgaaaatgcagacgttactgcttacaag
acagctcttgcaaatgctcgtaagttagtaagtgacgcaaacgatgcaagcaagaagaac
agcgagcgtccaacgcaaaagcagattaacgaggcgcttgacgcacttaaagcggctaag
aagcagattgaagacaactacaagaccaatcttgagccgttgacttctgccaaagacttt
gcaggtggtgacttcaagaagacacctgagtatcaaaatgctgttgctaagaaggacgct
ggtgaccaaggtgccacacaagccttaggtgaagatggaaaagacacaggctttgacaat
attctcaagaaagttgccgaaaagcttaatgacgaagattggaagaaaaaagcaactcaa
aagcaagtaaacgctctgcttaaacagctccaagacgctcaagagaagattgcaaaggat
tataagactgatgcaattaagcttgaaaacgaagtcggcgataaagatcaagacggcaag
cctgtaacacctccattcgaggcgtcggtggcgtacaagaacgcgcttgaaaaagcgaag
gctgagtctaaagaggatgccgacaaagacacctctgcaactaagaagcttgctgcatat
gccgagaagcttgctaaagcaaacgagcttatcgaaaaggtcaagaatcctgatccaaac
gcaaagccagaagatcgtccaactcagaagcaggttgatgatgctcttgcggctttgaag
caggccaagaaggatatcgacgacaacttcaagaccaaagttgataagctccaaaatgaa
gttgatgataaaaatgaggatggcactgcgcgtactccaaagtttgaagaatcaactgag
tttgcaaaccttcaaggaaagactaaggatggcaaaaagcctgatgaccttgtagcgtat
gagcaagctttggcaaaggctaaggaactcatcgacaagaacgatggcaaagtcaagaat
gatcaaggtcaagaagttgacgttccaaaggatcagctcccatcccagaaggaagttgac
gaggctcttaagaatctgaaggaaattaaggataagattactaagaactacgtcaccagc
ccgcatgacttgcaagaagaagttgataagtcaaagggcggagatactgacaccagaacc
gacgtgttcgagaatactccagagttcaagaatgcgactgctaagggtgatgacgctgct
aagaaagctcttgacgactatgacaagaagctcaaggctgccaaggatcttcttgataag
tttgatcgcactactggaaagccaaagactgatcttccagatggtactaaagtcccaact
caaaagcaacttgacgatgctctaaaggatctccaagccgccaagaagaagattgccgat
gattacaagactgatccttccaagctgaaaacagaagcagatgctgatgctaagttccgt
gattctgtattctttatgattggaatgactgaggatattgacgcctataacaaggctttg
gctgaggctaacagtgtgcttaaggatccgaatgctactcaggctgaggttgacgcggct
ttgaagaagcttcaggcggctaagtataagattaatcacccgtttggcataggcagtggt
gttggaagcggtagcggctatgatgctgatgctagtgattctcagagtgcttcggttgat
aagactgctttgagagttgaggttaataattctgaagcagattcttctgctgcgtctaag
gcgaatactgctgctgctagagcttacgtgaaggctttggctgaggctaagcgtgtgctt
gctgataagaatgctactcaggctcaggttgatgccgctttgaggaatcttaaggctgct
aaggctgcgttgcgtaatgcttccggtaatgctggtggtcttgctaagacgggtgctgcg
actggcttgtttgcaagtcttgctgcaatcttctccggtcttggtgctgctggcgtagct
tctcgccgtcgtaagcactctaacgagtag
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integrated database retrieval system
