Gardnerella vaginalis 409-05: HMPREF0424_1049
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Entry
HMPREF0424_1049 CDS
T01146
Name
(GenBank) glycosyl hydrolase family 38 N-terminal domain protein
KO
K01191
alpha-mannosidase [EC:
3.2.1.24
]
Organism
gva
Gardnerella vaginalis 409-05
Pathway
gva00511
Other glycan degradation
Brite
KEGG Orthology (KO) [BR:
gva00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00511 Other glycan degradation
HMPREF0424_1049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gva04131
]
HMPREF0424_1049
Enzymes [BR:
gva01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.24 alpha-mannosidase
HMPREF0424_1049
Membrane trafficking [BR:
gva04131
]
Autophagy
Cytoplasm to vacuolar targeting (CVT) pathway
Selective cargos
HMPREF0424_1049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_38N
Glyco_hydro_38C
Alpha-mann_mid
Glyco_hydro_57
Glyco_hydro38C2
Rota_VP4_MID
SCAN
Motif
Other DBs
NCBI-ProteinID:
ADB13678
LinkDB
All DBs
Position
complement(1191384..1194518)
Genome browser
AA seq
1044 aa
AA seq
DB search
MFLLPEQQLNRCTRVMQQRLYPYINTVLSHCKIRAYEIAGEPISSNEFFSKLKRNDIVFS
SFNVPGVWGTTWGTTWFEVTGSIDFSKVKGRKVELNVDLGWISNLFPGFQAEGLVYNLDG
RVIKAVNPCNHWVPLIDEHNNRSISIDENGNFTLYLEAADNPFVEGSTPFSPTDLGERAT
GKTECQYMLKYVDVTVFNRNIFDYYMDLETVSSLMCELNDDNPRYWKLAKALQLSLNAYD
EHDFSTVQNARKELFNVLSRSAAASSIKHTAVGHAHIDSAWQWPVRETHRKVARTVSNVL
ALMDEDPDFTYAMSSAQQYEWLENEHPDLFERMKKRIKEGRFIPVGGMWVESDVMMLCGE
SLIRQMTFGKHYFKKHLGVEPHGIWLPDSFGYTGALPQLARRAGFDWFLTQKISWNDITK
FPHHSFLWEGIDGSRILAHFPPSNTYASSVSMHELVYSQRNFLDKDLSDHAILLYGFGDG
GGGPTREMTARIRRDRNLEGSPRVDFGTPDELFEKIRKDIVDDSNGDTPVFKGELYLELH
RKTLTSQQDMKRYCRMEESLLRVAEYLVVLARVYAPEYRFNSNELTRIWKTLLLNQFHDI
LPGSAIAWVHRQAREEYARDISCLRKIISDIAHVIVKANSATGTISAINMRENVKLLTYT
GKNEVAWNLYQCNESGKNNKTTVKHKNDGGIILNNSVLSVTIERDGTVSSVKDIKFNREL
IPSGYRMAQYEILKDEPYQWDAWDVDRDAFMRNRKIDDSSIADVKELLSGGVSVEILACK
KDIKIKTNIILEPCVKRLDFHAQVDWKAKEQFLKVDMPTSICSNNAQYECQYGLVERPIV
KNTRSDDAKFESCTHRFVRIEDSSYAVAVANSSTYGADAAPIGDYVSSCGTMLRLSLLSA
PLYPDPNTDQGKHEFTWSFIADANMDSVLSIADFLNSPIIDKLPDVDPLFTIHRNSGLIA
LDWVKLADDCSGDIILRIYEPCGGCASGQIKLNKILRAASIEEVDLMEMPVLHGMPVALH
KNNDVLNIELHPFQLCSLRIHIAS
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgtttttattacctgagcagcagttgaatcgctgtacaagagttatgcaacaacgccta
tatccatatataaatactgttttatcgcactgtaaaattcgagcatatgagattgctgga
gaacctatttcttctaacgaattcttttctaagctaaaaagaaacgatattgtgtttagc
tcatttaatgttccaggtgtttggggaacaacttggggtacaacatggtttgaagttaca
gggtcgattgatttttcaaaggtaaaagggcgcaaagttgagctaaatgttgatttaggt
tggattagcaatctttttcctggttttcaagctgaaggattagtatataatctcgatgga
agagttatcaaagctgtaaacccttgtaatcattgggttccattgattgatgaacataat
aatcgttctattagtattgatgaaaatggtaattttactttatatttagaagctgcagac
aatccatttgttgaaggatctactccattttctcctactgatttaggagagcgtgctact
ggaaaaaccgaatgccaatatatgttgaagtatgttgacgttactgtttttaatcgtaat
atttttgattattatatggatcttgagactgtaagttctttgatgtgcgaattaaatgat
gataatccgcgttattggaaattagctaaagctttacagctctccttaaacgcatatgat
gagcatgatttttctactgttcaaaatgctcgtaaagagttgtttaatgtattaagtcgc
tctgctgcagcaagctctataaagcatacggctgttgggcatgctcatattgattctgct
tggcaatggcctgtgcgagagactcatagaaaggttgcgcgcactgtatctaacgtttta
gctcttatggatgaggatcctgattttacttatgctatgagttctgctcaacaatacgag
tggctagaaaacgagcatcccgatttgtttgagcgtatgaaaaagaggattaaggaaggg
cgttttatacccgttggaggtatgtgggttgagtctgatgtaatgatgctatgcggtgaa
tctttaattcgccaaatgacttttggtaagcactattttaagaagcatcttggtgttgag
ccacatggtatctggcttccagacagttttggttatactggagcattgcctcaacttgct
cgccgcgctggttttgattggttcttaactcaaaagatttcttggaacgatatcactaaa
ttcccgcatcattcattcctttgggaaggaatagatggttctaggattttggctcatttt
cctccatctaatacttatgcttcatctgtgagcatgcatgagttagtctattctcaacgc
aattttttggataaagatttatctgatcacgcaatattgttatacggttttggcgatggc
ggtggcggacctactcgcgaaatgactgctcgtattaggcgtgatcgcaatttagagggg
tctcctagagttgatttcggcactcctgatgagttgtttgaaaaaatacgaaaagatatt
gttgacgattcaaatggtgatacaccagtgtttaagggtgagctttatctagagttgcac
aggaaaactcttacttctcagcaagatatgaagcgctattgccgtatggaggaatcattg
ttgcgtgtggctgaatatcttgttgttttagctcgagtttatgcgccagaataccgtttt
aatagcaatgaacttactagaatttggaagactttattattgaaccagttccacgatatt
cttccaggctctgctattgcatgggttcataggcaagctagagaagaatatgctagagat
atttcttgtttacgtaagattatctcagatattgctcatgtgattgtaaaagctaacagc
gcgactggtactattagtgcgattaatatgcgtgaaaatgtaaagttattgacttataca
ggtaaaaatgaggtcgcttggaatttatatcaatgcaatgaaagcggtaaaaataataaa
acaactgtaaaacacaaaaatgatggtggaataattcttaataatagtgttttaagtgtg
actattgaacgcgatggcacagtatcttctgttaaagatattaaatttaatcgcgagcta
attccatctggttatcgcatggcgcaatacgagatactaaaagatgagccgtatcaatgg
gatgcgtgggatgttgatagagatgcatttatgaggaatcgtaagattgatgattcttca
attgctgatgttaaagaacttttatcgggtggtgtgtctgttgaaatcttggcatgtaaa
aaagatataaagattaaaacaaatataattttagagccatgtgttaaacgacttgatttc
catgcacaagttgattggaaagctaaagagcaatttttgaaagtagatatgccaacatct
atatgttcaaataatgcgcaatatgagtgtcaatatggtttagttgaacgtccaatagta
aaaaatactcgtagtgatgacgcaaaatttgaatcatgcacgcataggtttgttcgtata
gaagattcctcttatgctgttgcagttgcgaattcgtctacttatggcgctgatgctgct
cctattggcgattatgtttcatcttgtggaactatgctcagattatctttgctttctgcg
cctctttacccagatccaaatacggatcaaggtaagcatgaatttacttggtcatttatt
gctgatgcaaatatggattcagtgctaagtatagctgattttttgaattcgccaattatt
gataagcttccagatgtagatccgctgtttacgattcatagaaactcaggtctaattgca
ttagattgggttaagctagctgacgattgttctggagatataattttgcgtatttacgag
ccatgtggtggctgcgcaagtgggcaaataaaactcaataaaatcttgcgtgcggcttcg
attgaagaagtggatcttatggaaatgcccgtgttgcacggtatgcctgtagctttgcac
aagaataatgacgtgttaaatatagaattacatccttttcagctatgctcattgcgcatt
cacattgcatcttaa
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