Gardnerella vaginalis 409-05: HMPREF0424_1055
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Entry
HMPREF0424_1055 CDS
T01146
Name
(GenBank) putative phosphonate C-P lyase system protein PhnK
KO
K02031
peptide/nickel transport system ATP-binding protein
K02032
peptide/nickel transport system ATP-binding protein
Organism
gva
Gardnerella vaginalis 409-05
Pathway
gva02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
gva00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
HMPREF0424_1055
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
gva02000
]
HMPREF0424_1055
Transporters [BR:
gva02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Peptides/nickel transporter
HMPREF0424_1055
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
SMC_N
AAA_21
AAA_29
nSTAND1
AAA_16
Mg_chelatase
AAA_22
MMR_HSR1
AAA_23
DUF87
RsgA_GTPase
AAA_19
oligo_HPY
AAA_28
AAA_15
Pentapeptide_2
MobB
FtsK_SpoIIIE
nSTAND3
ORC-CDC6-like
IstB_IS21
MeaB
Pox_A32
Motif
Other DBs
NCBI-ProteinID:
ADB14425
LinkDB
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Position
complement(1200775..1202457)
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AA seq
560 aa
AA seq
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MSLNIQNLTLKLGGKLILDNVSIEISDGERVGLVGSSGSGKSMLIRAITGLLPSNAEISG
SCMLGNLQTVKAKDENLASIRGKYVGVVFQQANRALNPMLSVEKQISLPLRIHYNLDDDD
IHNRVCMMLEKVGLSKNLASQRTFELSGGQQQRVGIATALITSPRLILADEPTTALDSVT
QSEVVRMLASLVDDMGASMLFVTHDFSVLSHAANRCYVLDSGRVVDSENVKNLLDNPRIS
STKQLVSAAKKLTFRAQNLGSKNLDSAKVGSANTGSANVDSENADFKKFNSHIGNSEENS
LINAKNIHVTLGRAKTRAEVLSGVDLHLNIGESLAIIGGSGSGKTTLIRAMLGLETLCEG
NVTYCGEIVNNANLLEVNKNACTLMRRESSLVFQHPFAALDPHWTVQKSVAEPLRIWRKS
LKLDDATIEQRVCEMLKLVGLKPEDFLERHPHELSGGQAQCVCIARALINNPRVLLADEP
MSAIDVAERTRILDAFASIRSERKSMSCIFVSHDLGMIRHLATRVIVLNEGKVVECGSVN
DVLNNPQNDYTRALVNAAIM
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgagcttaaatattcaaaatctcacgctaaaacttggcggaaaactaattcttgacaac
gtatcaattgagatttctgacggtgagcgtgttggcttagttggttcttctggctctggc
aaatctatgctaattcgagctataactggattattgccgtcaaatgctgaaatttcaggc
tcttgtatgcttggcaatcttcaaacagtgaaagcaaaagatgaaaatttagcttctatt
cgtggaaaatacgttggtgtagtatttcagcaagctaatagagcgcttaatccaatgtta
agcgttgaaaaacaaatttctttgcctttgcgaatacattacaatctagatgatgacgat
attcacaatcgagtatgcatgatgcttgaaaaagtagggttgtcgaaaaatctcgcatct
caacgcacgtttgagctttctggaggtcaacagcagcgagttggtattgctacagctttg
atcacctctccgcgtttgattttggctgatgagcctactactgcgcttgactcggttaca
caaagtgaagttgtgcgaatgcttgcttcacttgtagatgatatgggcgcttcaatgctt
tttgtaacgcacgatttttctgtgctttcgcatgctgctaatcgttgctatgtgctcgat
tctgggcgtgtggtcgatagtgaaaatgttaagaatttgcttgataatccgcgtatttct
tctactaaacaattagtgagtgctgctaaaaagttgacttttagagcgcaaaatttgggt
tctaaaaatttagattctgcaaaagtgggttctgcaaatactggttctgcaaacgttgat
tctgaaaacgctgattttaagaaatttaattcccatattggcaacagtgaagaaaattcg
cttataaatgcaaaaaatattcacgttactttaggtcgagcaaaaactcgtgctgaagtg
ttaagcggtgtagatttacatcttaatattggcgaatctttggcgattattggcggatct
ggttccggcaaaacaactcttatacgcgctatgttggggcttgaaactctttgcgaaggt
aacgttacttattgcggtgaaatcgtaaataatgcaaatttattagaagtaaataaaaat
gcttgtacgcttatgagacgcgaatcgtcgcttgtatttcagcatccgtttgctgcattg
gatccacactggacagttcaaaaaagtgttgctgagcctcttagaatatggcgaaaatcg
cttaaattagacgatgcaactattgagcagcgtgtttgcgaaatgttgaaattagtaggc
ttaaaacctgaagattttttggaacgtcaccctcacgagctttctggcggtcaagcgcaa
tgtgtttgtattgctcgcgccttaattaataatcctcgagttttgcttgctgacgagcct
atgagtgcaattgacgttgctgaaagaactcgcattttagacgcttttgcgtccattcgc
tccgagcgtaaaagcatgtcatgcatatttgtaagtcatgatttgggtatgatccggcat
ttagcaacgcgagttattgttcttaatgaaggaaaagttgtggaatgtggcagtgtaaat
gatgtgctcaataatccacaaaatgactacactcgtgctcttgtaaacgcagcaatcatg
taa
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