Gardnerella vaginalis 409-05: HMPREF0424_1080
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Entry
HMPREF0424_1080 CDS
T01146
Name
(GenBank) hypothetical protein
KO
K15255
ATP-dependent DNA helicase PIF1 [EC:
5.6.2.3
]
Organism
gva
Gardnerella vaginalis 409-05
Brite
KEGG Orthology (KO) [BR:
gva00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gva03032
]
HMPREF0424_1080
03029 Mitochondrial biogenesis [BR:
gva03029
]
HMPREF0424_1080
Enzymes [BR:
gva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
HMPREF0424_1080
DNA replication proteins [BR:
gva03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
HMPREF0424_1080
Mitochondrial biogenesis [BR:
gva03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial DNA replication factors
Mitochondrial DNA maintenance factors
HMPREF0424_1080
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PIF1
AAA_30
AAA_19
Pif1_2B_dom
AAA_22
Viral_helicase1
AAA_16
SH3_13
AAA_5
NTPase_1
DEAD
AAA_11
SLFN-g3_helicase
AAA
nSTAND3
TrwB_AAD_bind
MeaB
AAA_14
cobW
Zeta_toxin
AAA_24
AAA_18
AAA_25
NAT10_TcmA_helicase
KdpD
Motif
Other DBs
NCBI-ProteinID:
ADB13894
LinkDB
All DBs
Position
complement(1236118..1237575)
Genome browser
AA seq
485 aa
AA seq
DB search
MKQSEALTIINAGASAFITGAPGAGKTYVLNEAIRAMRKNGLSVAVTASTGIAATHLNGQ
TIHSWSGVGVSNALTDTLLKTIRARRGKRIKATDVLVLDEVSMIHAWLFDMVDEVCRKVR
KNPAPFGGLQVVISGDFFQLPPVSTSMRNRDVFEPSSEFISSREKYAAAGKNPEGYITES
FAWDALKPVVCYLTEQHRQDDGKLLEVLTDIRSGLVSDDDKQVLASRLGEYPQDDEVAVH
LFPTNAQADGLNNMQLAEINAESHEFVATEAGPKNLVDRLKKNMLAPERLVLKAGAAVMA
LRNDQEKQYVNGSVGRVLRFAPESKGGWPIVEFENGNIVTLKPAAWEMTDGETVLASVNQ
VPLRCAWGITIHKSQGMTLDSAVMDLRRTFAPGMGYVALSRVENLGGLYLEGINDRAFSV
SADAVLLDGSLREASRCASELLASDGASSFVAKKADGDFADQQEFSLFENAGDGVTDEFS
FDDEF
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaatccgaagccttaaccataatcaacgctggcgcgagcgcgttcattaccggt
gctccgggtgcaggtaaaacctacgtattaaacgaagctattcgcgcaatgcgaaagaac
ggtttaagcgttgctgtaactgcctctaccggtattgcggcaacgcacttaaacggtcaa
accattcactcgtggagtggagttggagtttcaaacgcgcttacggatacgcttcttaaa
acaattagagctaggcgaggaaagcgcataaaagccacggacgtgctcgtgttggacgaa
gtttccatgattcacgcgtggctttttgacatggttgatgaagtttgccggaaggtgcgc
aaaaatcccgctcctttcggcgggcttcaagtagttatttcgggcgacttcttccaattg
ccgcctgttagcacttctatgcgaaatcgtgacgtgttcgagccgagctcggagtttatt
tcgtcgcgcgaaaagtatgctgcagctggaaaaaatccggaaggctatattacggaatcg
tttgcatgggacgctttgaaacctgttgtgtgctacttaactgagcaacatcgtcaggat
gacggcaagttgctagaagttttgacggatattcgtagcggtctcgtgagtgacgacgat
aagcaagtgcttgctagccgccttggtgagtatccgcaagatgacgaagttgcagtacat
cttttcccaacgaacgcgcaagcagatggcttaaataatatgcagcttgcggaaattaat
gctgagtctcacgaattcgttgcaacggaagcaggacctaaaaatctcgttgatcgatta
aaaaagaatatgcttgctccggagcgtttagttttaaaggctggggctgctgtgatggcg
ttgcgaaacgatcaggaaaagcagtatgtaaacggctctgttgggcgtgtgttgcgtttt
gcgcctgaatctaagggcggatggccgattgttgagtttgaaaacggcaatattgtaact
cttaagcctgcagcgtgggaaatgacggacggtgagactgtacttgctagcgtaaatcaa
gtgcctcttcgttgcgcgtggggaattacgattcataagtcgcaaggtatgactctcgat
agtgcggtaatggatttgcgtagaactttcgctcccggaatgggatatgttgcgctttct
cgcgtggaaaatctgggcggtctttatttggaaggtattaacgatcgcgcgtttagtgtt
tcggcggatgctgtactgctagacggatctttgcgtgaggcgtcaaggtgcgcaagtgag
ctgcttgctagcgatggggcttcctcgtttgttgccaaaaaagcagatggtgattttgcg
gatcagcaggagtttagtctttttgaaaatgccggtgatggcgttacggacgaattttct
ttcgacgacgagttttaa
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