Gardnerella vaginalis 409-05: HMPREF0424_1114
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Entry
HMPREF0424_1114 CDS
T01146
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gva
Gardnerella vaginalis 409-05
Pathway
gva03030
DNA replication
gva03430
Mismatch repair
gva03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMPREF0424_1114
03430 Mismatch repair
HMPREF0424_1114
03440 Homologous recombination
HMPREF0424_1114
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gva03032
]
HMPREF0424_1114
03400 DNA repair and recombination proteins [BR:
gva03400
]
HMPREF0424_1114
Enzymes [BR:
gva01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HMPREF0424_1114
DNA replication proteins [BR:
gva03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HMPREF0424_1114
DNA repair and recombination proteins [BR:
gva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HMPREF0424_1114
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
DUF655
tRNA_anti_2
DUF5487
Motif
Other DBs
NCBI-ProteinID:
ADB14227
LinkDB
All DBs
Position
complement(1281397..1284963)
Genome browser
AA seq
1188 aa
AA seq
DB search
MTQPETNFVHLHNHTHYSLLDGASKIPDLVARAKELGMPAVAITDHGNMHGAYEMWSTAV
KAGIKPIIGIEAYVTPETARQDKSRVHWGTEDQRADDVSGGGLITHMTLWAENDTGLTNL
LKASSVANLEGRVMRYPRMDKDVLSTYSKGVIASSGCPSGIIQTRLRLGQFKEALRAAGE
FQDIFGRDNFFIELMNHGLSIETRVTKDLLEIAKKLNAPLLATNDLHYVHEEDREAQDAM
LCINSGSRLDDPDRFKFDGSGYYLKSAEQMRELFKEFPEACDNTLEIARRCNVMFDDGED
GAFMPQFDCPEGWDETSLFLKKVEEGLERRYNNNIPMEVLKQADYECGVICQMQFCGYFL
VVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPMKHGLIFERFLNPERVSLPDI
DVDFDPDGRAKVLEYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKITKV
LPPAKNGKDMSLHDIFDEKSKRYAEAREFREMYDTDPDTHRITEEAKGIEGLIRQTGVHA
CATIMGSEPITNTSPLLERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTVIRDTLRNIE
NNGKDPIDYTKIPLDDKATYQLLSRGDTLGVFQLDSDGMRALLRTLKPDNFNDISALIAL
YRPGPMDMDSHTNYAKRKNGLQDIIPIHPEVAEPLKEVLDETYGLIVYQEQVQSAARILA
GYSLGKADVLRRAMGKKKPEVLAKEQVPFFEGMKAHGYSEEAAQAVWDVLVPFSGYAFNK
AHSAAYGLISYWTAYLKTHYPVEFMAALLQNERTNKDKTALYLGEARRMGIQVLQPDVNE
SVLEYSAVGDVVRFGLGAIRNVGDKAVNDIITEREGERGRFVNFMDFVQRVPISALNRRL
VESLIKAGAFDSIDSNRRALFQICDPAIDSVIALKRKQAEGQFDLFADLDSSSDSDDDNG
MGDMQITVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGLSAVLADLREMSIAQLIDRART
MSDGQQVTIAGLVTSVDRRVSRKGNAWAIVTVEDMESSIQCMFFGKVYEASAQELAIDQV
VRIRGQVEVRDETVSMRATEFEIPTLESVDERPLTVVIPRKVLDKGRVAQLSNILSRHPG
CCEVRLALVDDTGKAQVLTFGDRFRVKRDTSLFAEMKIVFGSSCLPSA
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgactcagccggaaaccaacttcgtacatttgcacaatcacacgcattattcacttcta
gatggtgcgtcaaaaatacctgatttagtagcgcgcgctaaagaattaggtatgccggct
gtagctattacggatcatggcaacatgcacggcgcgtacgaaatgtggagtacggctgta
aaagctgggattaagccaattattggcatagaagcgtatgttactcctgaaacagcaaga
caagacaaaagtcgcgtgcattggggcacggaagatcagcgtgcagatgacgtttctggc
ggcggtttaattacgcatatgactttgtgggcggaaaacgatactggcttaacaaatctt
cttaaagcttcgtctgtggcgaatcttgagggtagagttatgcgctacccacgtatggat
aaagacgtgctttcaacctactcaaaaggtgtaattgcgtcttcaggatgcccttctgga
attatccagacgcgtcttcgcttaggtcagttcaaagaggctttacgagcagctggtgag
tttcaagatattttcgggcgtgacaatttctttatcgagcttatgaatcacgggctttct
attgaaacgcgcgtaactaaagacttgcttgaaattgcaaaaaaacttaacgcacctctt
cttgcaacaaacgatttgcattacgttcatgaagaagatcgtgaagcgcaagatgctatg
ctttgcattaattccggctcgcgcttggacgatcctgaccgttttaagtttgacggttca
ggatactatttgaagtccgctgagcaaatgcgtgagctttttaaagaatttccagaagct
tgcgataacacgcttgagattgctcgtcgatgcaatgttatgttcgacgacggcgaagat
ggcgcttttatgccgcaatttgactgcccggaaggttgggatgagacttcgctattcctt
aaaaaagtcgaggaaggtttggagcgtcgttacaataacaacattccaatggaagtttta
aagcaggctgattacgagtgcggtgtgatttgccaaatgcaattctgcggatacttttta
gttgttgcagattatattaattgggctaaagcgcatggtgtaatggtaggtcctggtcgt
ggttctgctgcaggcgctatggttgcgtacgcaatgggcatcacagagcttgatcctatg
aagcatggtctgatttttgaacgcttcttaaacccggagcgcgtatccttgcctgatatt
gatgttgattttgacccggatggcagggccaaagttcttgaatacgtgggcgaaaaatac
ggtagagataaagttgctcagtgcgttatttacggaactattaaaacgaagcaagctctt
aaagattctgcgcgtattatgggctacgagttttcagtaggcgaaaaaattacgaaagtt
cttcctcctgctaaaaacggcaaagatatgagcttgcacgatattttcgacgaaaaatca
aagcgttacgctgaagcgcgcgagtttcgcgaaatgtacgacacggatccagatactcat
cgcattacggaagaagctaagggcattgaaggtttgattcgtcaaacaggtgtgcatgct
tgtgcaacaatcatgggctcggagccaatcacaaacacttcgccacttttagagcgcact
gacggtactattactacaacttttgagtatcacacttgtgaaacgctcggtcttgtaaaa
atggactttttgggtctttccaacttgacagttattcgcgatactttgcgaaatatcgaa
aataatgggaaggatccgattgattatactaagattccgttagacgataaagctacttat
caactgctttctaggggtgatactttaggcgtttttcagcttgattccgacggtatgcgt
gcgcttctacgtactttgaaaccggataatttcaatgatatttcggctttgattgcactt
tacaggcctggtcctatggatatggattcgcatacgaattatgctaagcgcaagaatggt
ttgcaagatattatccctattcatccagaagttgctgagccgttaaaggaagttctggac
gaaacttacggtttgattgtttaccaggagcaggtgcagtctgcagcgcgtattttagca
ggatacagtcttggtaaagcagatgtgttacgtcgagcaatgggcaagaaaaagccggaa
gtgctggcaaaagagcaggtgccattctttgaaggtatgaaagctcacggatattctgaa
gaagctgcacaagctgtgtgggatgttttggttccgttctctggttacgcgtttaataaa
gctcactctgcagcttatggcttgatttcttactggactgcatacctaaaaacgcattat
cctgtggaatttatggcagctttgcttcaaaacgaacgtacgaataaagacaaaactgca
ctgtacttgggcgaggcaaggcgcatgggtattcaagttttgcaacctgatgtaaacgag
tctgttcttgagtattctgcagttggagatgttgtgcgctttggtttgggtgctattcgt
aacgttggagacaaagcagtaaacgatattattactgagcgtgaaggtgagcgcggacgt
ttcgtaaactttatggattttgtacaacgtgttcctattagtgcacttaatcgacgttta
gtagagtcgcttattaaagctggagcttttgattctattgattcaaatcgtcgtgcgctg
tttcaaatttgtgatcctgcaattgattctgtgattgcgcttaagcgcaagcaggcagag
ggtcagtttgatttatttgctgatcttgattcgtcttctgactcggatgacgacaacggt
atgggagatatgcaaattactgtacctgatgttgaagagtgggataaaaagacaaagctt
aattttgagcgagaaatgcttggattgtacgtttctgatcatccactaagcggattgtct
gcagttttggcagatttacgtgagatgtcaatcgctcaactgatcgacagagcaagaact
atgagcgacggtcagcaagtaactattgcaggcctagttacgagcgtagataggcgagtg
tctcgaaaaggtaatgcttgggcgattgtcacagttgaagacatggaaagttcaatacaa
tgcatgttctttggcaaagtgtacgaagcttcagcgcaagaacttgcaattgatcaagtt
gtgcgtattcgtggacaagttgaagtgcgtgatgaaactgtttccatgcgtgctacagag
tttgaaataccaactcttgaatcagtggatgagagacctttaacagttgttattcctcgt
aaagttctagataaaggtcgtgttgcgcaattaagtaatattttgagccgacatccaggc
tgctgtgaagtgcgcttggctcttgtcgacgatacaggcaaggcacaagttcttactttt
ggagatcgtttccgtgtaaagcgagatacttctttgtttgctgaaatgaaaatcgttttt
ggatctagttgtttgcctagtgcgtag
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integrated database retrieval system
