Gardnerella vaginalis 409-05: HMPREF0424_1150
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Entry
HMPREF0424_1150 CDS
T01146
Name
(GenBank) hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gva
Gardnerella vaginalis 409-05
Pathway
gva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF0424_1150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gva03019
]
HMPREF0424_1150
Messenger RNA biogenesis [BR:
gva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HMPREF0424_1150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Presenilin
Motif
Other DBs
NCBI-ProteinID:
ADB14249
LinkDB
All DBs
Position
complement(1330147..1332174)
Genome browser
AA seq
675 aa
AA seq
DB search
MNMKIEYDECTEEILAEVVRDALQSDADNMRSLNNQESSASSKQIRQSVEKVNKKMSADT
STKSVSTKDVKTAKTKSTKKAKFNKETKTENAKSSTRRTGNVLPPVVNDQREGALIAPPK
YRKGSMRIVPLGGLGEIGRNMNVIEYNGHILLIDCGVLFPEEEQPGVDLILPDFHYIQDR
LDKVEALVLTHGHEDHIGGVPYLLKMRPDIPLIGSKLTLAFVEAKCKEHHIDPELIRVEG
RDKMKVGPFNLEFITVTHSIPDALAVCVKTPAGTLIDTGDIKLDQLPLDHRITDLVEFGR
LGEQGIDLLMADSTNAEVPGFVKPETSIGPALDRAFAEATRKIIVASFSSHVHRVQQVVD
AAHKFGRKVVFVGRSMVRNMSIAADLGYLHIPENTVVDLKQAKDIQDDKLVYMCTGSQGE
PMAALGRIADGNHRDITVNEFDTVILASSLIPGNEHEVYKVINKLVQLGARVINKDNAAI
HVSGHCNEGELLYLYNIVKPKCAMPIHGEHRHLVANGLIAVKTGVDPNNVVLAEDGDVVD
LYHGNAAVVGSVPCGYVYVDGDSVGELTDEELEKRRILGTEGFVSSFVVVDTEHADVVSG
PKIFLNAVAEDEADFEKVRHQIVEQLQDAMMRGEHDTHKLQQIMRRTLGSWVARALRRKP
MLVPVVADISENNQE
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgaatatgaaaatagaatatgatgaatgtactgaggaaattcttgctgaagtagtacgc
gatgcgttgcaatctgacgctgataatatgcgttctcttaataaccaagaatcttctgcg
tcgtctaagcaaattcgacagtcggtggaaaaagtgaataaaaaaatgtctgctgatact
tcaactaaatcagtatctactaaagatgtaaaaactgctaaaactaaatcaactaaaaaa
gctaaattcaacaaagaaactaaaacagaaaatgcaaagtcatcaactcgtagaacagga
aatgttcttcctcctgtagttaacgatcaaagagaaggtgctcttattgcgccgccaaag
tatcgtaaaggatcaatgcgaatcgtaccgcttggcggtttgggtgaaatcggccgcaat
atgaacgtaattgaatataacggtcatattttgcttatcgattgcggtgtgctattccca
gaagaagagcagccaggcgttgatttgattctcccagattttcactacattcaggatcgt
ttagacaaagttgaggcattggttttaacgcacggtcacgaagatcatattggtggcgtg
ccttaccttcttaagatgcgtcccgacattccgttaattggttcaaaactaactcttgct
tttgtggaagctaagtgcaaagagcatcatattgatccggagcttattcgtgtagaaggt
cgcgataagatgaaagtcggtccgtttaaccttgaatttattactgttacgcattctatt
ccggatgcgctcgctgtgtgcgtaaaaactccagccggaacgcttattgatactggtgat
attaaacttgaccagcttcctcttgaccatcgcattactgatttagttgagttcgggcgt
ttaggtgagcaaggcatagatttgcttatggctgattccactaatgctgaagttccagga
tttgtaaagcctgaaacttcgattggtccggctttggatcgcgcttttgctgaagctacg
cgcaaaattattgttgctagcttctcaagtcacgttcatcgcgtgcaacaagtggttgac
gctgcgcataagtttgggcgcaaagttgtgttcgtcggacgctcgatggttcgcaatatg
tcaattgctgcggatttaggctacttgcatattcctgaaaatactgttgttgacttaaaa
caggcgaaggatattcaggatgacaagctcgtatacatgtgcactggttcacaaggcgag
cctatggctgcactcgggcgtattgcagatggcaatcaccgagatattactgttaatgag
ttcgacactgttattcttgcaagttcgcttattccaggcaacgagcatgaggtttacaaa
gttattaataagcttgtgcagttgggtgcgcgcgtaattaacaaagataatgctgctatt
cacgtgtctggtcattgcaatgaaggcgagttgctgtacttgtacaacattgtgaagcca
aagtgcgctatgccaattcatggtgagcatcgtcacttggttgcaaacggattgattgca
gtaaaaactggcgttgatccaaataacgttgtgcttgctgaagacggcgatgttgtggat
ttgtatcatggcaatgctgcagttgttggttctgtgccatgcggttacgtgtatgttgat
ggtgattctgttggtgagcttacagatgaagagcttgaaaagcgcaggattttgggcaca
gaaggtttcgtttcaagttttgttgtagttgatacagagcacgctgacgttgtttctggc
ccaaagattttcttgaatgctgttgctgaagacgaggctgattttgagaaggttcgtcat
caaattgttgaacagttgcaagatgccatgatgcgcggagagcacgatactcataagttg
cagcagattatgcgacgaactttgggtagttgggttgctcgcgctttgcgtaggaagcca
atgcttgtaccggtagttgcggatatttcggaaaataatcaagaataa
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