Gardnerella vaginalis 409-05: HMPREF0424_1177
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Entry
HMPREF0424_1177 CDS
T01146
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
gva
Gardnerella vaginalis 409-05
Pathway
gva00521
Streptomycin biosynthesis
gva00541
Biosynthesis of various nucleotide sugars
gva01100
Metabolic pathways
gva01110
Biosynthesis of secondary metabolites
gva01250
Biosynthesis of nucleotide sugars
Brite
KEGG Orthology (KO) [BR:
gva00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
HMPREF0424_1177 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
HMPREF0424_1177 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
HMPREF0424_1177 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
HMPREF0424_1177 (rfbB)
00525 Acarbose and validamycin biosynthesis
HMPREF0424_1177 (rfbB)
Enzymes [BR:
gva01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
HMPREF0424_1177 (rfbB)
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GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
NAD_binding_4
3Beta_HSD
Polysacc_synt_2
adh_short
NmrA
Motif
Other DBs
NCBI-ProteinID:
ADB13670
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Position
1380245..1381336
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AA seq
363 aa
AA seq
DB search
MHNYASNSNIFQPHHILVTGGAGFIGSNFVHYIAKYHVTVAVTVLDLLTYAGNMANLYDL
PQDFANNRYAFIRGDIRDENIVDQLLDPHNPIKTAEGTTLPAIDAIVNFAAESHNDNAIE
FSDPFISTNILGTHTLIKFAHKYNIRFHQVSTDEIYGDFPIDSVLKFDESSPYCPSSPYS
ASKAAGDLLVKAWCRTYGLRATISNSSNNYGPRQHIEKFIPRQITNIMCNMPAKLYGVGD
SIRDWIHVEDNCDAIWHVLTRGTIGETYNIGANCEVNNINILRILMQLMGVPETNIAYVN
PRIGEDRRYALDTTKIRTQLKWEPKYNNLKQGLQETISWYGSHADLWKPIKAQVEQHYAE
LGH
NT seq
1092 nt
NT seq
+upstream
nt +downstream
nt
atgcacaactacgcatcaaacagtaatatttttcaaccacaccacattttagttactggc
ggcgcaggttttattggatctaattttgtgcattacatagctaaatatcatgtaacggtt
gctgttacggtacttgatttgcttacttacgctgggaatatggcaaatctttacgactta
cctcaagattttgcaaacaaccgatacgcttttattcgcggagatattcgagacgaaaat
atagttgatcagctattagatccgcataatccaattaaaactgcagaaggaacaacactt
cctgctatcgacgcaatcgtaaattttgctgcagaatcacacaacgataatgcaatcgag
ttttctgacccgtttataagcacaaatattttaggaacgcatacactcattaaattcgca
cacaaatataatattcgcttccatcaagtaagcaccgatgaaatttacggagattttcct
attgacagcgtgcttaaattcgacgagtcaagtccatattgtccatctagtccatattct
gcaagcaaagctgcaggcgatctcttggtaaaagcatggtgtagaacttacggtttgcgc
gcaactatttcgaatagcagcaataattacgggccacgacagcatattgaaaagtttatt
cctcgccaaatcacaaatattatgtgcaatatgccagcaaaattgtacggcgtaggagat
tcgatacgcgattggatccacgttgaagataattgcgacgcaatatggcatgttctaacg
cgtggaacaatcggtgaaacatataatatcggtgccaactgtgaagttaacaacataaat
attttgcggattttgatgcagttaatgggcgtgccggaaacaaatatagcgtatgtaaat
cccagaataggcgaggataggcgttacgcactagatactacgaaaattcgaacgcaatta
aaatgggagcctaagtacaacaatttgaagcaaggcttgcaagaaacaatatcgtggtac
ggctctcacgctgatttatggaagcctattaaagcgcaagtcgagcagcattacgctgaa
ttagggcactga
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