Gardnerella vaginalis 409-05: HMPREF0424_1196
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Entry
HMPREF0424_1196 CDS
T01146
Name
(GenBank) LPXTG-motif cell wall anchor domain protein
KO
K20276
large repetitive protein
Organism
gva
Gardnerella vaginalis 409-05
Pathway
gva02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
gva00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
HMPREF0424_1196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rib
RibLong
Big_6
GspA_SrpA_N
PUA_3
bMG3
DUF4625
Bact_surface_Ig-like
CarboxypepD_reg
bMG6
Motif
Other DBs
NCBI-ProteinID:
ADB14436
LinkDB
All DBs
Position
1402734..1412255
Genome browser
AA seq
3173 aa
AA seq
DB search
MANNNRKKHAREQVESSFKNVDSSSAYATMRKVSLSTLATVLTAATCLGGQPILASSNIL
LPPTTAAFAEEVRKNDPTPWLHTPNILEYQRYRYLNSKGEFGYVGDDKVGDWDKIISKTD
MYAHVQGEGNNRYMVFDVFFNNDGKSMVSASTTQQYVWQIPYAIADLNNGGYKGDTMRNL
RFDFYKRNNKSPQTYANLSHDIGLFEHDASRSFSQDFLKDSQDHNNSTYHYSIGVRPGRP
GDQDIKDNFHVNPDALDSAIKKALPPNQRPYNGYNYGIGITTTHVDYAVHMHCELKLRPD
VTDEEIKNAFTWANSSSYGRTTHSAYTFISGRTKDENVPPTKSDKIPPKLYFNGKEISDS
NNSITVYQGDIPTITFGTSDDSGKVNSFSVKGLPNGNGDVTENSNGMEATEAKHHNHVVN
RVKFEYKNGNTPANTDYTVTVSATDASGNKVEKKVTVHLKNLNQKYKAPTTTPITVDWGH
KATNEELKKHVSNIEGGGQLDFNTFPETKLPDIAFNGKDTATTSTSAKVIYSDNSYHIVT
IPVIVRKPLALQHKSELKDHEVKVNVGDPLTKAGNKVDAKEYLGITDKKVKDNIKSAEWV
NGEPSTAVAGKREYTAKVTFNDGSTAEEKVTFTVRPKKPTIETDLTGVAGVKGKEVKVNA
GPGTAGSTVTLKDSKGNQIGTGKVGNDGKVTITVANGIPEGSITAVTTTADSVSSDASDA
KKATKDDKAPTLTADKDSITVKVGEDLKIQLTAKDDVKIESIDTATATMAFARNDFSKMM
AVAARAKTDYTKNSDKEKVFTYSFSGFKPEEVGTYTLTFSATDAAGHKTEKTVTVKVEKK
EDIKSKNIAVDLGHKLTEKDAEKAIANGRKLKKAGATFKWSTETGGTPDTSTVGKEKTGK
VIVTIPTNNPKNPRVETVDVKVTVKDHKEPEVTIKQKGNDGNYNNVSITVDSSQKVVTKT
ATITTYRGDKNDIKITATDNSGNVTTLTLTSKIPGETEKTPTGTGTDKDPKTLTLDGTTP
LNTKPGEYTRTLKAVDPSGNTTNVSVKFVVKTQADKYSKVTGTPVTYNMGSGTKHPDPKS
GINADDLKKLPSDATYSWAKEPDWNKPGEQKDAKVRITFKDGSTKDVTTTVTVKDNIAPV
IENPATNQVKHDDKQMYYQFKVHKDKPFDIEIKSYDNSGKISSATISTFPGHDGKITIDN
QNGNSAEKPATIHIKGTGKRADNTNPDANKWSRELVVTDEAGNTSTLKVQISVYTDAEEH
NAAPNATPKNPDQNAITNAITITKKDDPKKTPIDKKDLTFTVGNIPQDDGVHTVPVTITY
PDHSTTIVNVPVLIHKDAKDYDPKGQTVEVPWNTKPEELTKKIKSFGSGNGLKWNGKSPK
QDPTVEIVNTKDVPNTDKPGESKVQVNVKYSDGSSDVATVTVKVLKPQSETYKPEGQTIN
IDYNKTPNTGISSKITGVGKDKGISFGKDKQDKDITLPEGASIAIDDKAKTVPDGTQPGD
FTVPVTITYKDGSKSNATVKVTVGKPQSETHTPKVDNSGITKKYGESGPSDSEIIAKVTV
PNKPTGTKITVDDGQTPIDTKTPGTVNVKVTVTYPDGSEDRVEVPVTVGNPDNVTHKASA
TPIELKRNKDNTNKPNEDDIKKHVTTGVAETEKQPTITVDTDKIPDTNKTGTTNVPVTIK
YEDGTTTTVQVPVVVTDTNADEYTPNVDPVEEQYGTSRNDTKEAVKKAVTVPDWPDKDDK
TKPQPKVTITSKDEDIPDGTKPGTYHVHVDVQYPDGTVDKVTVDVTIKNKQSDTFEPKAK
PVVKPYGTKVTSDDITKNVTVPNWPEADKDKLTIELNDPNQTLPDGKTPKTVNVKVKVTY
PDGTTDIVNVPVTISNKQSELYPPKADSITKKNGEAPTAEDIKKAVEIPNWPEGNGKVTK
TVDSTSIPDGKKGGTFNVPVTVTYPDGSVAKIDVPVNIGNPEAATKVVTVPKNSDPDPKN
SIANNGDFPQGTQFEWLKKPDTSNEGNGIKGKVKITIPGSDTPQEVSVDVNVVDPSASEV
NVPQKGKLPDAKDVIKDSSETSKYPSGTTFTWKPENTPDTSNSGKKDGVILVTLPGQSPV
EVPVTVNVLPKPEANVVNVPLNGTLPEAKDVIKDSTDKNKFPNGTTFEWKTKPKTDESGK
DKKGVITVTIPGVNGKQGYTVDVEVPVNVTPEPIAKETTVAQNSDPDPKNSIENNGSFPD
GTTFTWGTGKDGKSGKPDTSKAGNSVPGIVVVTVPGIKDPITVPVSVNVIPAPVAKDMTV
LQKKDGNTTGKEPNAEDAIANKGNFPDGTQFKWKEDADGKKGGKPDTSHVGNQPSVVTIT
VPGMTPVDVPVNVLVVPNPEGKTVSVPVNAKPKPEDSISNKDDLPQGTTFDWKKDSAPNT
DKPGTTKGTVLVKIPGVNNPVEVQVTLNVTDKPFINDGNAENTPTKPDKTTITGKTQPGN
TVTVKDNGGNTVGTGTANEDGNFTIEIDKKDPGTTLKLVPSKGNEEGTPVEVTVTAKPQK
PTITVPTDNQKNDGNVTVTPPTGDTTVVKIEINAKPNSINGPEQPVRTIIAKKDNDGKWK
IDGDAPDGVTVNPNTGVVTIPAKNLEDGSTITAVSKNKTDKPSDPATAVTGFKTPQITQQ
TLKDNPDDSTKQIITGKTLPGAKVTVTDNNGNQIGTGTVDKDGNFTITINKQTPGAIVTL
TPTNGKGDGAKTGDSVNITVSGNITKPKIDTPAEGGASVTPDLTDTRVNKVVVTYTPEGS
ETTATITVVAKGDKHEWKIDGDAPDGVTVNPQTGVVTIPANKIKSGSTITAQSEDSSDKT
GKSKSEVVTAKVAEKEKPAPTPTPTPAGEPTILTPQDGVEQGSATVTPPADADTLEITYT
PEGDTTTPVTITVKKDKNGNWTINGNTPTGVTVDPKTGKVTIPATQIKDGSTITAQAKKN
GQPSNTANGKVGNNPTKKPEPEPTPTPAGEPTILTPQDGVEQGSATVTPPADADTLEITY
TPEGDTTTPVTITVKKDKNGNWTINGNTPTGVTVDPKTGKVTIPATQIKDGSTITAQAKK
NGQPSNMANGKVGNNPTKKPEPTPAPTPAPTPEHESGSHDSDEHTGNSENNRNKSNNTQL
QAPKSPARHSSGQVAQSKLTNTGSAIAAAGAVAALAAAIGAALAVIIRRKKRD
NT seq
9522 nt
NT seq
+upstream
nt +downstream
nt
atggcaaataacaaccgcaaaaagcatgcacgcgagcaagttgagagctcgtttaaaaac
gttgattcatcttctgcgtatgcaaccatgcgcaaggtgtcattgagcacacttgccaca
gttctcactgcagcaacctgcttgggtggtcagccaatcctcgcatcctctaatattctt
cttcctccaactactgcggcatttgcggaagaagtgcgtaagaacgaccctactccttgg
ctgcatacaccaaacattcttgagtatcagcgctaccgttacttaaacagtaaaggcgaa
tttggctacgttggagacgacaaagtcggcgactgggataaaatcatcagcaagaccgac
atgtatgcgcacgttcaaggcgaaggcaataacagatacatggttttcgacgtgttcttt
aacaacgacggcaaatccatggtttctgcatcaacaacgcagcaatacgtgtggcaaatt
ccttatgcaattgccgatttaaacaacggcggctacaagggtgacactatgcgcaatctt
agatttgacttctacaagcgcaataacaaatcacctcaaacatatgcaaatctttcgcac
gatattggcttgtttgaacacgacgcaagcagatcgttcagtcaagacttcttgaaagat
agccaggatcacaataactcaacataccactactctataggtgtacgccctggcagacca
ggtgatcaagacataaaagataacttccatgttaacccagatgctttggattctgctatt
aaaaaggctctcccaccaaaccaaagaccttataacggctacaactatggcattggcata
acaacaactcacgttgattacgctgttcacatgcattgcgagttgaagcttagaccagac
gtaaccgatgaagaaatcaaaaatgcctttacttgggcaaatagcagctcttatggtaga
actactcattctgcttacacctttatttctggtcgtacaaaagatgaaaatgtgccacct
acaaaaagcgataaaatccctccaaagctgtattttaatggcaaagagattagcgattcc
aacaacagcattaccgtgtatcagggagatattcctacaatcactttcggcacatcagat
gacagcggaaaggttaatagcttctcagttaagggtcttcctaacggtaatggagatgtc
actgaaaacagtaatggcatggaagcaactgaagctaagcatcacaaccatgttgttaat
agagttaagtttgaatataagaacggcaacacgccagcaaatactgactacacggttact
gtctctgcaaccgacgcttctggaaacaaagtagaaaagaaagttacagtacatcttaaa
aatctgaaccagaagtacaaggctccaaccactacaccgattactgttgattggggacat
aaggcaactaatgaagaattaaagaaacatgtttctaatattgaaggcggtggacaacta
gatttcaatactttcccagagactaaactaccagatatagcttttaacgggaaagatact
gctacaacatccacatcagcaaaagtaatatattcagacaattcgtaccatattgttacg
attcctgtaattgtcagaaagccgctcgcattgcaacacaaaagcgagctgaaagatcac
gaagttaaagtaaatgttggagaccctcttactaaagcaggaaacaaggttgacgctaag
gaatatcttggtataaccgataagaaggttaaagataacatcaagagtgcagagtgggtt
aatggcgagccttccacagctgttgcaggaaaaagagagtacactgctaaagtcacgttt
aatgacggcagcacagcggaagaaaaggttactttcacagttcgccctaagaaacctaca
attgaaactgatttgactggtgttgcaggcgtaaagggcaaagaagttaaagttaatgca
ggccctggcacagctggaagcactgtaacgcttaaagatagcaagggcaatcaaattgga
actggaaaagttggcaacgatggcaaagttacgattacagttgctaatggcattcctgaa
ggaagcattactgcagtaactactactgcagattccgtaagctctgacgcaagcgacgct
aagaaggctactaaggatgacaaagctccaacgcttactgccgataaagatagcattacc
gtaaaagttggcgaagatctgaagattcagcttactgcaaaagatgatgtaaagattgag
tctattgacacagcaacagcaacgatggcttttgctcgaaatgatttcagtaagatgatg
gctgtcgcagcgcgtgcaaaaactgattacacgaagaatagtgataaggaaaaggttttc
acttatagcttctccggctttaagcctgaagaagttggcacttatactcttacgttctcc
gcaactgatgctgctggtcacaaaacagaaaaaactgtgactgtaaaagtggagaaaaaa
gaagacattaagtcaaagaatattgctgttgacttaggtcacaagctcaccgaaaaagac
gccgaaaaagctattgccaacggaagaaagcttaaaaaagcaggcgcaaccttcaagtgg
agcactgaaactggcggaactccagacacttccactgttggcaaggaaaagactggaaaa
gttattgtaactattcctactaacaatccaaagaatccgcgcgttgaaactgttgacgtt
aaggtaactgttaaggatcataaagagcctgaagttacgattaagcaaaaaggcaatgat
ggcaactataacaatgtttcgattactgttgatagttcacaaaaagtcgttactaaaaca
gcaactattactacataccgcggtgataagaacgatattaagattaccgcaacagacaac
agcggaaacgttacaactcttactttaacgtctaagattccaggagagacagaaaaaact
cctactggaactggcacagataaagatcctaagactttgacgcttgatggcactactccg
ctcaacactaagcctggcgagtatacgcgtaccttaaaagcggtggatccttcgggcaac
actacaaacgtgtctgtgaagtttgttgttaagacgcaggcagataagtatagcaaagtc
acaggcacgcctgttacgtacaacatgggcagcggcacaaagcatccagatcctaagagc
ggtattaatgcagatgatttaaagaaactacctagcgacgctacctactcttgggctaag
gagccagattggaataagcctggcgagcagaaagatgctaaagttcgcataacatttaag
gacggttcaactaaagacgttactacaactgttactgttaaagacaatatcgcgcctgtt
attgagaaccctgctacaaatcaggtgaaacatgacgataaacaaatgtactaccaattt
aaagtacataaagataagccttttgatattgaaattaagtcttacgataacagcggcaag
atcagtagcgcaacaatatcaacattcccaggccacgacggaaaaatcactattgacaat
caaaacgggaattctgcagaaaagcctgcgactattcatattaaaggcactggaaagcgc
gcagataatacgaatcctgatgcgaataagtggtctcgtgagcttgttgttacagacgaa
gctggcaatacatccacgctaaaggttcagatttccgtatacacggatgctgaagagcat
aatgctgctcctaatgctacaccaaagaatcctgaccaaaacgcaattaccaacgcaatt
actattaccaagaaggatgacccgaagaagaccccaattgataagaaagatttgactttc
acagttggaaatattcctcaagatgatggtgttcacactgttcctgtaacaattacatac
ccggatcattcaactacaatagttaatgttcctgtgttgattcataaggatgctaaggat
tatgatccaaagggtcaaacagttgaagttccatggaacactaagccagaagaattgact
aagaaaattaagtcgtttggcagtggcaatggcttgaagtggaacggcaaatctccaaag
caagatccaacagtagaaatcgtcaacacgaaagacgttccaaacaccgataagcctggc
gagagcaaagttcaagttaatgttaagtattcggatggctctagtgacgttgcaacagta
actgttaaagtgctgaagccacaaagcgaaacttataagccagaaggtcaaacaattaac
attgactacaataagacgccgaatacaggtatatccagcaagattaccggcgttggcaag
gataaaggcattagctttggtaaagataagcaagacaaagatataacgcttccagaaggc
gcaagtattgctattgacgacaaagctaagactgttccagatggcactcagcctggcgat
tttactgttcctgtaaccattacgtataaggatggttctaagagtaatgcaacggtaaag
gttactgtaggaaagcctcagagtgaaactcacacgccaaaggttgacaacagcggaatc
actaaaaagtatggagaaagtggtccttctgacagtgaaatcattgctaaagtcactgtt
ccaaacaaaccaactggtacaaaaattacagttgacgatggtcaaacacctatcgacact
aagactcctggaaccgtaaacgttaaggttactgttacctaccctgacggttctgaggat
cgcgtggaagttcctgtaacagttggcaatccagataacgtgactcataaggcttctgca
acgcctatagagttgaagcgcaataaagacaatacaaataagccaaatgaagatgacatt
aaaaagcatgtcacaactggagttgctgaaactgagaagcagccaaccattactgtagac
acggataagattccagatacaaacaagactggtacaactaatgttcctgtaactattaag
tatgaagacggcactaccacaaccgtacaggttcctgttgttgtaacggatacaaacgca
gacgaatacactccaaacgttgaccctgtggaagagcagtatggtaccagcagaaacgat
actaaggaagctgttaagaaggctgtaactgttcctgattggccagataaagatgataaa
actaagccacagccaaaagtcactatcaccagcaaagatgaggatattccagacggcaca
aagcctggtacttatcatgtacatgtagatgttcagtatcctgatggaactgttgataaa
gttactgttgatgtgactattaagaacaagcagtcggatactttcgagccaaaagcaaag
cctgttgttaagccgtatggcacgaaggttacatctgatgatataactaagaatgtaact
gttcctaattggccagaagcagacaaggataagttaacgattgagttgaacgatcctaac
cagactttgccagatggtaagactcctaaaaccgtaaacgttaaggttaaagtcacctac
ccagatggcacgactgacattgttaatgttccagtaactattagcaataagcagtctgaa
ctttacccacctaaggcagatagcattaccaagaagaatggcgaagcacctactgctgaa
gacattaaaaaggctgtagagattcctaattggccagaaggcaatggcaaagtcacaaag
actgttgattctacgagcattccagacggcaaaaagggcggcactttcaacgttcctgta
acagttacctacccagatggaagcgttgctaagattgacgtgccagtaaacattggcaac
ccagaagccgcgactaaagttgtgactgtgccaaagaacagcgatccagatcctaagaac
agcattgctaacaatggtgacttcccacaaggaacgcagttcgagtggttaaagaaacca
gacacgtctaatgaaggcaacggcataaaaggtaaagtaaagattactattcctggatct
gatactcctcaagaagtgtcagtagatgtaaacgtggttgacccaagtgcatctgaagtc
aacgtgccacaaaaaggcaagttgccagatgctaaggatgttattaaggattctagcgaa
acgagtaagtatcctagcggaactacctttacatggaaacctgagaatacaccagatacc
agcaactctggaaagaaagatggagttatactagtcaccctaccaggccaatcccctgtg
gaagtgcctgtaacagtgaacgttttgccaaagccagaagcgaatgttgtgaacgttcca
ctaaatggcacactgccagaagctaaggatgttattaaggattctaccgataagaataag
ttccctaatggcactacgttcgagtggaagactaagccaaaaacagacgagtctggcaaa
gacaagaaaggcgtaataaccgtcactattccaggtgtaaatggcaagcaaggctacact
gttgatgtcgaagttcctgtgaacgtaactcctgagcctatagcgaaggaaaccaccgtt
gctcagaacagcgatcctgatcctaagaacagcattgagaacaatggcagcttcccagat
ggcactacctttacttggggtacaggcaaagacggaaagtctggcaagccagacacgtct
aaggctggcaatagcgtacctggcatcgttgttgtaactgttccaggcataaaagaccct
ataacagttcctgtaagcgtaaacgttataccagcacctgttgcaaaagatatgactgtg
ctgcaaaagaaggatggcaatacaactggcaaagaacctaacgcagaagatgctattgca
aataagggcaacttcccagatggtacacagttcaagtggaaggaagacgcagacggcaag
aaaggcggcaagcctgatacgtcacacgttggcaaccagccaagcgttgtgactattacg
gttccaggaatgactcctgtagatgtgcctgtaaacgtgcttgttgtgccaaatccagaa
ggcaagacggtgagcgtgccagtaaacgccaagccaaagccagaagacagcatctccaac
aaagatgatttacctcagggaaccaccttcgactggaagaaagattctgctccaaatact
gacaagccaggcaccactaaaggcactgtgctcgtcaagattccaggcgtaaataaccca
gtagaagtgcaagtaactctaaacgttacagacaagccatttattaatgatggcaatgct
gaaaacacgccaactaagcctgataagaccactattactggtaaaactcagccaggaaac
accgtaactgtcaaagacaatggcggtaatactgttggtactggaactgccaacgaagac
ggaaacttcactatcgaaatcgataagaaggatcctggtacaacactcaagcttgttcca
agcaaaggtaatgaagaaggcactccagtagaagtaaccgtcacggctaaaccacaaaag
ccaacgattacggtaccaaccgacaaccagaagaacgacggaaacgtaactgtaactccg
ccaactggcgacacaacggttgtaaagattgaaatcaatgctaagccaaattcaatcaat
ggtccagaacagccagttcgcacaattattgctaagaaggataacgatggtaagtggaag
attgacggagacgctccagatggcgtaactgttaatccaaatactggcgttgttactatt
ccagcaaagaatttggaggatggcagcactattactgcagtatctaagaacaagacggac
aaaccatctgatcctgctactgctgtaaccggctttaagactccgcagattactcagcaa
acgctgaaagataatccagatgattctactaagcaaatcatcactggaaagacgcttcca
ggtgcgaaggtaactgttaccgataacaatggcaatcaaatcggaactggtactgtagat
aaagatggcaacttcactattactatcaacaagcaaacgcctggtgccatcgtcaccctc
acaccaaccaacggtaagggtgatggtgcaaagacaggcgatagtgtaaatattactgtc
agcggaaatataactaagccaaagattgacactccagccgagggtggcgctagcgtgacg
cctgatctcacggatacgcgcgtgaacaaggttgtagttacttacactccagaaggcagt
gaaacaaccgcaacgattactgttgttgctaaaggcgacaagcatgagtggaagattgac
ggagacgctccagatggcgtgactgttaatccgcaaactggcgttgttacgattccagca
aacaagattaagagcggtagcactattactgcgcaatcagaagacagtagcgataagact
ggcaagagcaagtcagaagtggtaactgctaaagttgccgaaaaggagaagcctgcacca
acaccaacaccaacgcctgcgggtgagccgactatactcacaccacaagatggtgttgag
caaggttccgcaactgttaccccaccagcagacgctgatactctcgaaatcacgtatact
ccagaaggcgatacaacgactcctgtaacaattaccgtgaagaaagataagaatggtaac
tggactattaacggtaacactccaaccggcgtgactgttgatcctaagactggtaaagtc
accatccctgcaacccaaatcaaggatggtagtacgattaccgcgcaagccaagaagaat
ggtcaaccatccaacacggcaaacggtaaagtcggaaacaacccaaccaagaaaccagaa
ccagaaccaacgccaacgcctgcgggtgagccgactatactcacgccacaagatggtgtt
gagcaaggttccgcaactgttaccccaccagcagatgctgatactctcgaaatcacgtat
actccagaaggcgatacaacgactcctgtaacaattaccgtgaagaaagataagaatggt
aactggactattaacggtaacactccaaccggcgtgactgttgatcctaagactggtaaa
gtcaccatccctgcaacccaaatcaaggatggtagtacgattaccgcgcaagccaagaag
aatggtcaaccatccaacatggcaaacggtaaagtcggaaacaacccaaccaagaaacca
gaaccaacacctgcaccgacccctgctccaaccccagaacatgaatctggttctcatgat
tctgatgaacacactggcaacagtgaaaacaacaggaataagagcaataacactcagtta
caagctcctaagtctcctgcacgtcactcctccggccaggttgcgcaatcaaagttaacc
aacacaggctctgcaattgctgcagcaggtgctgttgctgcactcgcagccgcaataggt
gctgcactcgcagtcattattcgcaggaagaagcgcgactaa
DBGET
integrated database retrieval system
