Gardnerella vaginalis 409-05: HMPREF0424_1273
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Entry
HMPREF0424_1273 CDS
T01146
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
gva
Gardnerella vaginalis 409-05
Brite
KEGG Orthology (KO) [BR:
gva00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gva03032
]
HMPREF0424_1273 (topA)
03400 DNA repair and recombination proteins [BR:
gva03400
]
HMPREF0424_1273 (topA)
Enzymes [BR:
gva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HMPREF0424_1273 (topA)
DNA replication proteins [BR:
gva03032
]
Prokaryotic type
DNA Topoisomerases
HMPREF0424_1273 (topA)
DNA repair and recombination proteins [BR:
gva03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HMPREF0424_1273 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
ADB14011
LinkDB
All DBs
Position
complement(1519537..1522383)
Genome browser
AA seq
948 aa
AA seq
DB search
MAAQNKLVIVESPTKARKIGGYLGNGYTVMASVGHIRDLAQPSQVPASRKAAFGKFGVDV
DHGFAPYYVVGSDKKKTVSDLKSALAKADELYLATDEDREGEAIAWHLVEALKPTVPVKR
MVFHEITKDAIQASLSNTRNVDDNMVDAQETRRVLDRLYGYELSPVLWRKVGPGLSAGRV
QSVATRLIVERERERMAFTKASYWDISAVLSSKGSDGESVDFEARMSELSGRRLAGSKDF
NSKGELVSTKDESQKALHVDADFASKLSKALENSDFVVDSMETKPYRRRPLPPFTTSTLQ
QTAGNRLSMSSRQTMRAAQSLYENGYITYMRTDSVTLSKEAIEAARSAARAAFGDEYVSQ
SPKQYATTSAGAQEAHECIRPAGARFLSPDELADKLPADQLKLYTLIWQRTLASQMADAT
GFTATVKLNASAGEYGEALFQASGTVITFAGFMKVFGNAHASEGESDKALPQMQAGDVLE
AKSVSADSHETQSPARYTEASLVKTLEAKEIGRPSTYATIISTIIDRGYVYERGRALIPS
WLAFAVIKLLEANFPKYVDYAFTADMENGLDRIAHGEETGRDWLTRFYFGSGEGAANSAD
EAHIGLQQQVAELGEIDAREINTIDIGDGLHVRIGRYGPYLEDIKNLDAEGNPRHASLPE
TLAPDELTVDAARELLENNAEGPRVLGVDPETGGNVEVRNGRFGPYVALVEEQDNAEDSK
SSKASKARPKMASLFKTMDPATLTLQEALQLLNLPRLVGEYEEVDAEGVVKLARIEANNG
RYGPYLTKTYSAVDTSAGETVESKPDTRSLSSEDAIFTVTLQEAKDLFAQPKYVKRTRGA
AKPPLRELGADPETGKPVVIKDGFYGAYITDGETNRTLPKQYTPESIDPQDAFALLAQKR
AAGPVKRKKRATKSTAKSSEKKSTAKKSTAKKTSTKKTTSKKSTAKKA
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggcagcacagaataagctagtcattgtggagtctcccacgaaagcgcgaaaaattggc
gggtatttagggaatggctacaccgtcatggcttcagttgggcatattcgcgatctcgct
cagccaagccaagttccagcctcacgcaaagcagcgtttggcaagtttggtgtagatgtc
gatcatggttttgcgccatattacgtagttggctcagataaaaagaaaactgtttccgat
ttaaagtctgcgctcgcaaaagctgacgaattatatctggcaactgatgaggatcgcgaa
ggtgaagctattgcgtggcacttggtagaagcgttgaagccaactgtgccagtaaagcgt
atggtgtttcatgagattactaaggatgcaattcaagcctcgcttagtaatactcgaaat
gttgacgacaatatggttgatgcgcaagaaactcgtcgtgtgttagaccgtttgtatgga
tatgagctttctcctgttttgtggaggaaagttggtcctggtctttctgctggacgcgtg
cagtctgttgctactaggttgattgttgagcgcgaacgcgagcgtatggcgtttactaag
gcgtcttactgggatattagcgcggttttaagttctaaaggctcagatggcgagagtgtt
gattttgaagcgcgcatgagcgagctttctggtcgtcgtttggctggttctaaagatttc
aattcaaaaggtgagttggtctctacaaaagatgaatcacaaaaagctttgcatgttgat
gctgattttgcatctaagctttctaaagctcttgagaattcagattttgtagttgactct
atggaaacgaagccgtatcgtcgtcgtcctttgccaccttttactacatcaactttgcag
caaactgctggaaaccgactttcaatgagctctcgccaaactatgcgagctgcacaatct
ctatacgaaaacggctatatcacttacatgcgtacggattccgtaacgctttccaaagaa
gctatcgaagctgcgcgtagtgctgctcgtgcagcatttggcgacgaatatgtttcgcaa
tctcctaagcagtacgcaactacgtctgcaggagcgcaggaagctcatgaatgtattcgc
cctgctggagcgcgtttcttaagcccggacgagcttgcagataaattacctgcggatcag
ctaaaattgtatacgcttatttggcaacgaacccttgcgtcacaaatggctgatgctaca
ggttttacagcaactgttaagttaaatgcttctgctggagaatatggagaagctttgttc
caagcttctggaacagtaattacttttgctggttttatgaaggtttttggcaatgcgcat
gcatctgaaggtgaaagcgataaggcacttcctcaaatgcaagctggggatgttcttgaa
gctaaaagtgttagtgcggattctcacgaaactcagtctcctgcaagatatactgaagct
tctttagttaaaactttggaagctaaggaaataggacgcccttctacttacgcaacgatt
atttctacaattattgatcgcggatacgtgtatgagcgtggacgtgcgttaattccttct
tggcttgcttttgctgtaattaaacttttggaagcgaatttcccaaagtatgttgattac
gcgtttactgctgatatggaaaatggtttggacagaattgcgcacggtgaagaaaccggt
cgcgattggctaactagattctatttcggttccggtgagggtgctgctaattctgctgat
gaagctcatattggtttgcaacagcaggttgcagagcttggtgaaattgatgcgcgtgaa
ataaataccatagacattggcgatggtttgcatgtgcgtattggacgctatggtccgtac
ttggaagacattaagaatcttgatgctgaaggcaaccctcgtcatgcttctttgccagaa
actttagctccagatgagttaactgttgatgctgctcgagaattgcttgagaataatgct
gaaggtccacgtgtgcttggagtagatccagaaacgggtgggaacgtagaagtgcgcaat
ggtcgttttggtccgtacgtggcactggtagaagagcaggataacgcggaagattctaag
tcttctaaggcttctaaagctcgtccaaaaatggcttctttgtttaaaaccatggatcca
gcgactttgactttgcaagaagcgttgcaactcttgaatttgccacgtttggttggtgag
tatgaagaagttgatgccgaaggcgttgtaaaactagctcgtatcgaagcaaataatggt
cgttacggtccatatttaactaaaacatattctgctgtagatacttctgctggagaaact
gtggaatctaagccggatacgcgatccctttctagtgaagatgctatttttactgttact
ttgcaagaagcgaaagatttatttgcgcaaccaaagtacgttaagcgtactcgtggtgcc
gccaagccgcctcttcgtgagcttggcgcagatcctgaaactggaaagccagtagtgatt
aaggatggtttctacggagcttatattactgatggtgaaacgaatcgcactttgccaaag
cagtatacgcctgaatcgattgatccgcaggatgcgtttgcacttttggcgcaaaagcgt
gccgcaggtcccgtaaaacgcaaaaagcgcgcgactaagagcactgcaaaatcttctgaa
aagaagtctactgcgaaaaaatctaccgcaaagaaaacttctacaaagaagactacttca
aagaaatctaccgctaaaaaagcatag
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