Gardnerella vaginalis 409-05: HMPREF0424_1277
Help
Entry
HMPREF0424_1277 CDS
T01146
Name
(GenBank) transglycosylase
Organism
gva
Gardnerella vaginalis 409-05
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transgly
Transpeptidase
DUF6583
Motif
Other DBs
NCBI-ProteinID:
ADB14567
LinkDB
All DBs
Position
1525321..1527645
Genome browser
AA seq
774 aa
AA seq
DB search
MVARKDGRRASTSHEKATRSISSQSQKNTNMPSSVPPRGQESYRPNSYSFESNKSSRNSR
FERSRAATRRRRRRTWRGRHPIIFWALIVIFVPILLGTIVFAYLYATTDIPAPDKVAMAD
KTKVYYSDGKTELGSFAEQNREIINCSVLPKYVGKAIVASENRSFYHDGGIDFKGIGRAL
LHNITKHGRWGGSTITQQYAERYYLGETKTYFGKLKEAILALKIAQTQDKNTVLCNYMNT
IYLGRGAYGIQAAAKAYFGIEAKDLSLSQAALLAGIIPAPSSWDPAIGPKEAGIRFKRVL
RIMKEDGYITASQAAQAKMPKTITQTTQNIYAGQQGYLLHMVRDELTRNGAFTQEDLDSG
GYRIITTIDKAKQDLMFKVASPSQDGRGIVPEGLQVGGISINAKDGSIISVYAGDDYLKK
QLNNATQALYEPGSTMKPFALMGAIQAGTSLDTMFNGNSPRKFDGIDKPVGNFANMSYGT
INLYNATANSVNTVYMDLQSKLGAKKVAHTAVMAGLNPERVNGKNPFTVLGNDSVHVSEI
ARAYATFANQGRRPDLHIVASVKNPDGKEFYRAPTAGKQVFSPADAALATKAMIGVVQHG
TATEARAVGREIAGKSGTANDETAGSFVGFTPNIVTAFAIWNPDAKGSPQVIKPFHGYLG
GSDYPVHLFTRYMRQAVIGTPNTKFPEAKDTGKIGGPDGKWGLGEQHTFTHAKTENEDKD
KNKDKDKDKDNDNDLDLDSQLYGRDDSSSGGVGSYDNNSGGHGYDNNYDTTGGN
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atggttgcacgtaaagatggaagacgagcgtctacttcgcatgagaaagctactcgaagc
atatcgtcacaatcacaaaaaaatacgaatatgccttcatctgtcccaccacgcggacaa
gaatcatatcgtccaaattcgtattcttttgaatcaaacaaaagcagccgtaattcaaga
ttcgaacgttctcgcgcagcaacacgcagaaggcgtcgtagaacttggcgaggcagacat
cctattattttttgggcgcttatcgttatttttgtgccaattttgctaggcacaattgtt
tttgcttatctgtatgcaactacagacataccggcaccagacaaagttgctatggcagat
aagacgaaagtgtattattcagatggcaaaactgaattaggttcgttcgctgagcaaaat
cgcgaaattatcaattgttcagtactacctaaatatgttggtaaagcaatagttgcttca
gaaaatcgttccttctaccacgatggcggaatagattttaaaggaattggacgcgcacta
cttcataacatcacaaagcacgggcgttggggcggctcaactattacgcaacaatatgcg
gaaagatattatctcggtgaaacaaaaacttattttggaaaactaaaagaagctatttta
gctttgaaaattgcgcaaactcaagataaaaatacagtactttgcaattatatgaatact
atttacttgggtagaggagcatacggaattcaagctgcagccaaagcatatttcggcata
gaagcaaaagatttgtcactttcgcaagctgcacttttagcaggtattattccagcacca
agtagctgggatcctgcaattggtccaaaagaagcaggcattcgttttaagcgcgtgtta
cgcattatgaaagaagatggctacattacagcctctcaggcagcgcaagcaaaaatgcct
aaaactattactcagacgactcaaaacatttacgcaggtcaacaaggttacttattgcat
atggttcgcgatgagttaactaggaatggcgcttttacacaggaagatctcgacagtggt
ggatatcgcattattactactatcgataaagctaagcaagatttaatgttcaaagttgca
agtccttctcaagatggacgaggaattgtgccagaaggactgcaagttggcggaatttca
ataaatgcaaaagatggttcaatcatttccgtttacgcaggagacgattatctaaagaaa
cagcttaataacgccacacaagcgctttatgagccaggctctactatgaagccttttgcg
cttatgggagcaattcaggctggcactagcttggatacgatgttcaatggcaattctcca
cgcaagtttgatgggatcgataaacctgttggaaactttgcaaacatgagctatggcacc
attaacttatacaatgcaactgcaaattctgtgaacacagtgtatatggatttgcaaagt
aaacttggcgctaaaaaagttgctcataccgcagttatggcaggcttaaatcctgaacga
gtcaatggtaagaatccgtttactgtgctcggaaacgattctgtacatgtaagcgaaatt
gcgcgcgcatatgcaacatttgcaaaccaaggaagacgcccagatttgcatattgttgcc
agcgtaaaaaatcctgacggtaaagagttctaccgtgcaccaacagctggaaagcaagta
ttctcaccagccgatgccgctctagctacaaaagcaatgattggcgtagtgcaacatggt
acagcaactgaagctcgcgctgtaggtagagaaattgcaggaaagtctggaacagcaaac
gatgaaactgctggtagctttgtaggatttacgccaaatattgttaccgcatttgccata
tggaatccagacgcaaaaggtagcccacaagtaattaaaccgttccacggatatcttggc
ggaagcgactaccctgtacacttgtttacaagatacatgcgtcaagcggtaataggaacc
ccgaatactaaattccctgaagcaaaagacacaggcaaaattggcggacctgatggaaaa
tggggattaggcgaacaacacacattcacgcacgcaaaaactgagaatgaagataaggat
aaaaacaaggacaaagataaagacaaggacaacgacaacgatttagaccttgatagccag
ctgtatggtcgtgacgattcatcatcgggcggcgttggcagttacgataataattctggc
ggtcatggttatgacaataactatgacacaactggaggaaactag
DBGET
integrated database retrieval system
