Gardnerella vaginalis ATCC 14019: HMPREF0421_20044
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Entry
HMPREF0421_20044 CDS
T01344
Symbol
dnaX
Name
(GenBank) DNA polymerase III, subunit gamma and tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
gvg
Gardnerella vaginalis ATCC 14019
Pathway
gvg03030
DNA replication
gvg03430
Mismatch repair
gvg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMPREF0421_20044 (dnaX)
03430 Mismatch repair
HMPREF0421_20044 (dnaX)
03440 Homologous recombination
HMPREF0421_20044 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gvg03032
]
HMPREF0421_20044 (dnaX)
03400 DNA repair and recombination proteins [BR:
gvg03400
]
HMPREF0421_20044 (dnaX)
Enzymes [BR:
gvg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HMPREF0421_20044 (dnaX)
DNA replication proteins [BR:
gvg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HMPREF0421_20044 (dnaX)
DNA repair and recombination proteins [BR:
gvg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HMPREF0421_20044 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
AAA
RuvB_N
AAA_30
AAA_22
AAA_14
AAA_5
AAA_2
zf-CXXC
Rad17
AAA_19
AAA_18
Motif
Other DBs
NCBI-ProteinID:
ADP38130
UniProt:
E3D799
LinkDB
All DBs
Position
complement(43033..45348)
Genome browser
AA seq
771 aa
AA seq
DB search
MALALYRRYRPDTFEGVIGQNQVTVPLMRALDQGKITHAYLFSGPRGCGKTSSARILARC
INCKEGPTSKPCGKCQSCKDLATGGSGSIDVVEIDAASHNGVDDARELRERAGFAPARDR
YKIFILDEAHMVTPQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPFRLVP
PEVMGPYLQDICKKEGIQAQKGVLRLAMRAGGGSMRDTLSVLDQLMIGSDDGVISLDSAV
ALLGFTPSNLIADVIDALIEKDGAKLYEVVQKVVVGGFDTRKFVEDLLGRLRDLLLLVSA
GPNCAKNLLGDLSPEDMQDLQRQSSQLTLRSLSKMAEIVNNAFAGMANAVSPRMNLEILM
ARLLADMQSGTTAQEPFSKATNQSLAKSSSHPASSARHFIGSNSAVNSVNPVNPVNPVKI
AEAPSVILDDKSEINNNTQANWSTATVEKQTTQELDVDETWDNLVKNLPDDVREYVERDR
VPKVRLDDGNASKRRLVLTFDQPISQHAFALAICTTEPYDGKKVPVVVMNKVKDAFGKNV
AIAPDLVAANGEKVESVARMTPQRLAQVKRDLLMRKAGIVKGFGKIIEKSSDSNSNNSNS
SSDDAGSSDDSSAGAEASDLSGSAISESALDLDIEKDDAWAGMGSAPMGDAIAALQNADF
NAEVVNDSENADNAASNAQQWGQKSKISQQNPQRANSESQADNESKARISDGVNGAQEDE
CSMQDESLESATNLSIDDLEKMFEVKSVKEFAASDPKNPKNAGLHKRKQEE
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atggcacttgcattgtatcgaaggtatcgtccagacacgtttgaaggagtgataggacag
aatcaagttaccgttcctcttatgagagcgctagatcaaggcaaaataacgcacgcctac
ctattttcgggtccacgcggttgtggaaaaacaagctctgcgcgtattcttgctcgttgt
attaactgcaaagagggtcctacttctaaaccatgcggaaaatgccaaagctgtaaagat
cttgcaacaggcggatcaggttcaatagacgttgtagaaatagatgctgcaagccacaat
ggtgttgacgatgctagagaattacgcgaacgtgcaggtttcgctccagcgcgcgatcga
tataagatttttattcttgatgaagcgcacatggtaactccgcaaggattcaatgctttg
ctgaagattgtggaagagccacctgagcatgttatgtttatttttgccactactgaacca
gataaggtgattggaactatacgttctagaacccaccattatccgtttagacttgttcct
ccagaagtaatgggaccgtatttgcaagacatttgcaaaaaggaaggtattcaagcgcaa
aagggcgttttgcggcttgctatgcgcgctggcggcggatccatgcgagacacattatct
gttttagatcagcttatgattggctcagatgatggtgttatctcgttagattcagcagtt
gctttgcttggttttacgccttctaatcttattgcagatgttattgatgctcttattgaa
aaagacggtgcaaaactgtatgaagttgtacaaaaagtggtagtcggaggatttgacact
cgtaagtttgtggaagatcttctcggacggttgcgtgatttgttgcttttggtttctgct
ggtccaaattgtgctaaaaacttgttaggcgatttatcgccagaagacatgcaagatttg
caacgacaatcaagtcagctaactttgagaagcttgtccaaaatggcagaaatcgtcaat
aatgcttttgcgggaatggcaaatgcggtttctcctagaatgaatcttgagattcttatg
gctagacttcttgctgatatgcaatctggtactactgcgcaggaaccattttctaaagcc
actaatcaatctcttgcaaagtcctcctcgcatcctgcatcttctgcaaggcattttatt
ggttcaaattctgctgtaaattcagttaatcctgttaatccagtaaatccagtaaaaatt
gctgaagctccttcggtaattcttgatgataaatctgaaatcaacaataacacgcaagcg
aattggtcaactgcaaccgttgaaaaacagacaacacaagagcttgacgtggacgaaact
tgggataatctggttaaaaatctgccagacgatgttcgtgaatacgtagagagagatcgc
gttccaaaagttagattagacgatggaaatgcatcaaaaagaaggcttgtattaactttt
gaccagcctataagccaacatgcgtttgcgctcgcgatttgcacaacagaaccttacgat
ggtaaaaaagtgccagttgtggttatgaacaaagtaaaagacgcatttggaaaaaacgtt
gcaatagcgccagatttagtagctgcaaacggcgaaaaagtggagtctgttgcaagaatg
actccgcaacgactagcacaagttaagcgagacttgcttatgcgaaaagctggaatcgta
aaaggattcggaaaaataatcgagaaaagttctgattcaaattcaaataattcgaattcc
agtagcgatgatgctggctctagtgacgattcaagtgctggtgcggaggctagcgattta
tctggttctgcaatttcagaaagtgctttagatttagatattgagaaagatgacgcatgg
gcaggtatgggatctgctccaatgggagatgcgattgctgcattacagaatgcagatttt
aatgctgaagtagtaaacgattcagaaaacgcagataacgctgcatctaacgcgcagcaa
tgggggcaaaagtcgaagataagccagcaaaatcctcagcgcgcaaattcagaatcacag
gcagataatgagtcaaaagcacgaatctctgatggtgtaaacggcgcgcaagaagacgaa
tgttcaatgcaggacgaatcgttagagtcggcaaccaatttgagcatagatgatttagag
aagatgtttgaggtgaaatctgtaaaagaattcgctgcaagtgatccaaaaaatcctaaa
aatgcaggattgcataagcgaaagcaagaggagtaa
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