Gardnerella vaginalis ATCC 14019: HMPREF0421_20131
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Entry
HMPREF0421_20131 CDS
T01344
Symbol
gyrA
Name
(GenBank) DNA gyrase, A subunit
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
gvg
Gardnerella vaginalis ATCC 14019
Brite
KEGG Orthology (KO) [BR:
gvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gvg03032
]
HMPREF0421_20131 (gyrA)
03400 DNA repair and recombination proteins [BR:
gvg03400
]
HMPREF0421_20131 (gyrA)
Enzymes [BR:
gvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
HMPREF0421_20131 (gyrA)
DNA replication proteins [BR:
gvg03032
]
Prokaryotic type
DNA Topoisomerases
HMPREF0421_20131 (gyrA)
DNA repair and recombination proteins [BR:
gvg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HMPREF0421_20131 (gyrA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
Motif
Other DBs
NCBI-ProteinID:
ADP38217
UniProt:
E3D7Q9
LinkDB
All DBs
Position
146389..149028
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AA seq
879 aa
AA seq
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MVDEINAANDGEYRDQLPDGSMEPQSPQESDNTDYGLMKGARVKHMDLQQEMRESYLAYA
LSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKCSRVVGDVMGKYHPHGDSAI
YDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRMAPLAMEMVRDIDKDTVDF
LPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNMREVADGVHWALDHPDASN
SELLEALIQRIKGPDFPTGATILGHKGIEQAYRTGRGLITMRAVVNTEEIKGRMCLVVTE
LPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQRLVLVLKRDAVPKVVLNNLYK
HSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVSHQLEVIDRRTRYLKREAEERDHILQG
YLKALDMIDEVVALIRSSKDVDTARTGLMNLLDVDDVQADAILAMQLRRLAALERQKILD
EHEELMRKIEDYNDILASPERQRKIVGDELDEIVAKYGDERRTRILPFSGEMNVEDLIAE
ENVVVTVTRAGYIKRTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNR
GRVYRIKAYELPEGSRDSKGQHVANLLQFTPGETIQAVLSIPNYDVAKYLVLATRSGKVK
KTALQEYDSPRQGGLIAVRLMTNEETGEPADELIGAALCNSEDDIILVSKLGMSLKFRAD
DEQLRPMGRQTAGVQGMRFREDDELLDMDVVSVETSKDLLVVTNEGFAKRTAIEEYRLQG
RNGYGVKAVQLAEGRGSLVGALIVEETDQVMAIMKSGKVIRSDVNEVKRTGRTTQGVTLA
KPDKGDEIISIARNEERDDESDNKNEEVEENTSRRNLDE
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
gtggtagacgaaataaacgccgctaatgatggtgaatatagagatcagttgcctgatggg
tctatggaaccacaaagtccgcaagaatcagataatactgattacggcttaatgaaaggt
gctcgcgtaaaacacatggatttgcagcaggaaatgcgcgaatcatatcttgcttatgca
ctttctgttattgttgagcgcgctttaccagatgttcgagatggcttaaaaccagtgcat
cgtcgtgttatttacgctatgtatgatggcggctataggccagatagagggtataacaag
tgctctcgcgttgttggcgacgttatgggtaagtatcatcctcatggtgattctgctatc
tatgacactttggttcgtatggctcaatcttggtcaatgagatacatgcttgttgatggt
caaggaaactttggttccccaggtgatgatcctgcagcagcaatgcgttatacggaatgc
cgtatggcgcctcttgctatggaaatggttcgagatattgacaaagatactgttgatttc
ttgccaaactacgatggtaaaactcaagagccaacagttttgccagctcgtttcccgaat
cttttagttaatggttctgctggtattgctgttggtatggcaacaaatattccacctcat
aatatgcgtgaggttgccgatggtgtacattgggctttggaccacccagatgctagtaat
tctgagcttcttgaagctttaattcagcgaattaaaggtcctgattttcctactggagca
acaatcttaggtcacaagggaattgagcaagcgtaccgcactggtcgcggcttaattaca
atgcgcgctgttgttaataccgaagaaattaagggacgtatgtgcttggtggtcaccgag
cttccataccaagttaatcctgatcgcttagctgcctctattagggaagctgtgcgagat
ggaaagattcaaggcattgcagatatgcgcgatgaaacgtctggtcgtactggtcagcgt
ttagtgcttgttcttaaaagagatgctgttccaaaagttgttttgaacaacttgtataag
cattcgcaattgcagcaaactttcggcgctaacatgcttgcgcttgttgatggtgtgccg
cgcactttgagtttggatgcgtttattcgtcattgggtaagtcatcagcttgaagtaatt
gataggcgtacacgctacttaaagcgagaggctgaagagcgagatcatattttgcaaggc
tacttaaaagctttggatatgattgatgaagttgttgctttaattcgttcatctaaagat
gttgatactgctcgcactggtttgatgaatttgcttgatgttgatgatgttcaagcagat
gctattcttgcaatgcagcttcgtagacttgcagctttggaacgtcagaagattctcgac
gaacatgaagaattaatgcgcaagattgaagattacaatgatattcttgcaagcccagaa
cgtcagcgcaagattgttggcgatgagcttgatgaaattgttgctaaatatggcgatgag
cgcagaactagaattcttccattctctggtgaaatgaatgttgaagatcttattgccgaa
gaaaatgttgttgttacagtaactcgcgcaggctatattaagcgtactaaggcagacgag
tatcgtgctcagcatcgcggtggtaaaggaattaaaggcgctaaattgcgtgaagatgat
gtagttgatcacttcttcttaacttctacacacaattggttgttgttctttactaatcgc
ggacgagtttatcgcattaaagcttatgaacttccagaaggatcaagagattctaaagga
cagcatgttgctaatttgcttcagtttactcctggagaaacaattcaagcagtgttatcg
attccaaattatgatgttgctaaatatttggttttggcaactcgttctggaaaagttaag
aaaactgctttacaagaatatgattctccacgtcaaggtggtttgattgctgttcgacta
atgactaatgaagaaacaggcgaacctgctgatgagttgattggtgcagctttgtgcaat
tcagaagatgacattattcttgtttctaagcttggaatgagcttgaagtttagagcagat
gatgagcaacttcgaccaatgggtcgccaaactgcaggcgttcaaggcatgcgatttaga
gaagacgatgaattacttgatatggatgttgtatctgtagaaacaagtaaagatcttctc
gttgttacaaacgaaggatttgctaagcgaactgctattgaagagtatcgtttgcaagga
agaaacggatacggtgttaaagctgttcaacttgcagaaggtcgcggttctttggttggt
gccttgattgttgaagaaacagatcaagtaatggcaattatgaagtctggtaaggtaatt
cgctctgatgttaacgaggttaagcgtactggtagaacaactcaaggcgtgactttagct
aagccagataagggtgacgaaatcatctctatagctcgtaatgaggaaagagatgatgaa
agtgacaataagaatgaagaagtagaagaaaatactagcagaaggaacttagatgagtga
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