Gardnerella vaginalis ATCC 14019: HMPREF0421_20320
Help
Entry
HMPREF0421_20320 CDS
T01344
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gvg
Gardnerella vaginalis ATCC 14019
Pathway
gvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF0421_20320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gvg03019
]
HMPREF0421_20320
03009 Ribosome biogenesis [BR:
gvg03009
]
HMPREF0421_20320
Enzymes [BR:
gvg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HMPREF0421_20320
Messenger RNA biogenesis [BR:
gvg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HMPREF0421_20320
Ribosome biogenesis [BR:
gvg03009
]
Prokaryotic type
rRNA processing factors
HMPREF0421_20320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ADP38402
UniProt:
E3D8K8
LinkDB
All DBs
Position
386952..390482
Genome browser
AA seq
1176 aa
AA seq
DB search
MCILQAKSAKLLQSFARSIVPRVTREGFTVPEANNDKNEDKNLSFVAANSSANESTNAAD
EQRSAAASTVTSPVTAGVVNVVSGSQDAASSTRRRRAGRRVVRVAGAAGESMKLHVQGGN
DYDTRSEETESESVVEHQTPVRPITSLLFQEPVLPHRLPENNSRMRDLDYDDDANESDRE
NSRDDLDKDNSRSSRKLRKTRSGRNDRKNRNEDEDLSRVRSRKNRNNRNNFDDNYDSESD
DDTRVIRVRSRVNRADRTDRSNRANPEDLNEIDNRSDSRISRNNRDYLDKDSLDKSNFDK
ANLDKDNGDKYSENNNNGRKNRDNQDNYDDQNHRKSRKNRRLNAAERRAAAEVEQIEEDL
EYDDIVYSPIDDVIDERIENSVESDNDVDSESTRKYTKTSDLENNDDEDGEMITRRRRRR
RPSRADKEDRTDKSDRSSRRTTSDLSSDDSSYADDYDINEIEVSQEDRDLIPDPDELRSQ
DDEEVYTRRRRRRRSKSSDDSSQSSSSSQSSQNSQSTQSRFVSIDSDSSSRRSRKQQYID
EITDIEGSTRLEAKKQRRRDNRRERNRQNLLMEQDFLARRENVDRLMVVRERDRHTQISV
IEDNILVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEVNWDTT
RLEGQPRRMELAFKAGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGAMTGVSRK
LSDRERSRLRAIVSKIAPKDMGIIIRTAADGASEDAIEKDLESLVKQWERIEAKREEFLH
GKRPKLLQGEPDVAIRVVRDIFNDDFQKMIVEGKGAYDRICEYLEMMAPDLRSKIEYWDP
AEHEGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGRFIGRGKSLE
ETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQV
AEVTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRGFILHDEPTVSSEYADPYALKGGDPF
IKTNKHGHGSIADPMPVVKQESSADVRAKLARIAAAAASSAFLEESLRKSDEKDYNDNKD
DNNNDVNAVSADDVNNGDDADDSVVDGVDGVDSVDSVDSVDSVDESSVAGDFSAVDASSE
SAESSEESQVVGKIEESEDSQESQESTESSQESSEN
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
gtgtgcattcttcaggctaagagcgcgaaactattgcagagtttcgctaggagcatagtg
cccagagtaacacgagaaggcttcaccgtgcccgaagccaataatgataaaaatgaagat
aaaaatctttcattcgtagcagcaaattcaagcgcgaacgaatctactaacgcagctgac
gagcaaagatcagcagctgcttcaactgttacatcacccgttacagcaggtgttgtcaat
gtggtttcaggttcgcaagacgcagcgtcaagcacaagacgcaggcgtgctggaagacgc
gttgtaagagttgcaggagcagctggcgaatcgatgaaactacacgtacaaggcggaaac
gattacgatacacgctctgaggaaactgaatctgaaagtgttgttgagcaccaaactcct
gtaaggccgataacatcgctactttttcaggagcctgttttacctcatcgtttgcctgaa
aacaatagtcgtatgcgcgatttagattacgacgatgatgcaaatgaaagcgatagagaa
aacagtcgagatgatttagacaaagacaatagtcgcagttcacgaaagttgcgtaaaacg
cgttctggcaggaatgacaggaagaatcgcaatgaagacgaggatttaagtagagtacgt
agtcgcaaaaatcgcaataatcgtaacaattttgacgataactatgattctgaatctgac
gatgatacacgtgttattcgtgtgcgttccagagtaaatcgtgcagatcgtacagatcga
tccaatcgtgcaaatcctgaagatttaaacgaaattgataatagaagcgatagcagaata
agtagaaataatcgagattatctagataaggatagcttggataagtctaattttgataaa
gctaaccttgacaaagataatggtgacaaatatagcgagaataacaataatggtcgtaag
aatcgtgacaatcaggataattacgatgatcaaaatcatagaaagtcacgcaagaatcgc
agactaaacgctgccgaaagacgcgccgccgcagaagtcgagcaaatagaagaagacctt
gaatacgacgacatagtttattctccaatcgatgatgtaattgacgaaagaattgaaaat
agtgttgagtcagataatgatgtagattctgaatcaacccgcaagtatacaaaaacttct
gatttagaaaataatgatgatgaagacggagaaatgataacccgtcgtcgccgtcgtcgc
agaccgtctcgcgcagataaggaagataggacagataagtctgatagatcaagccgtaga
acaacatccgacctatcttcggatgattcttcatacgccgacgattatgacataaacgaa
atagaagtttctcaagaagaccgcgatttaattccagatccagacgagttgcgatctcaa
gatgacgaggaagtgtacactcgtcgtcgccgtcgtcgcaggtcgaaatcttctgacgat
tcgtctcaaagttcctcaagttcgcaaagttcgcaaaattcacaaagcacacaatcgcgt
tttgtgtcaatagactccgattcatctagtcgaagatctagaaaacagcagtatattgat
gagattacggatattgaaggttctacgcgacttgaagccaaaaagcagcgtcgtcgtgac
aatcgcagggagcgtaatcgccaaaacttgcttatggagcaagactttttggcaaggcgt
gaaaacgttgaccgacttatggttgtgcgtgaacgcgatcgtcacacgcaaatttctgta
atcgaagacaatattcttgtagaacactatgtttctgatattcaagaagttgcaacagta
ggaaatatttaccttggtcgtgtacaaaatgtgctgccaagcatggaggctgcattcgta
gacattggtcaagcccgaaacggcgtgctttacgctggcgaagtcaactgggatacaaca
cgattagaaggacagccgcgaagaatggagcttgcgtttaaggcaggagaccctgtttta
gtgcaggttactaaggaccctataggccataagggtgcgcgactaacatctcaagtaacg
cttgctggtaggttccttgtgcttgttccgtctggagctatgacgggcgtaagtcgcaag
ctatccgaccgtgaacgcagccgacttcgcgcaatcgtaagcaaaatcgcgcctaaagac
atgggcataatcattagaaccgccgcagatggtgctagtgaagatgcgattgaaaaagac
cttgaatcgcttgtaaaacagtgggaacgaatcgaagcgaagcgagaagagttcttgcat
ggcaagcggccaaagcttttgcaaggcgagccagatgtggcaattcgtgttgttcgagac
atatttaacgatgacttccaaaagatgattgtggaaggcaagggcgcgtatgaccgcatc
tgtgaatacttggagatgatggctcctgatttgcgcagcaagattgagtattgggatcct
gctgagcatgaaggcaaagacgtattcgataagtggcaaatcgacagccagcttagaaag
ggcatggagcgccaggtttatcttcctgcaggcggttcgattgttattgaccgcacggag
gcaatgacaacgattgacgtaaatacgggtcgttttattggtcgcggtaagtctttggaa
gagactgtgactcgctgcaatttggaagcttccgaggagattgcgcgtcagctgcgactt
cgcgatattggcggcatggttatgattgattacgttgacatggttatgccagcgaaccgc
gatcttgttttgcgccgtcttgttgagtgtcttgcgcgcgaccgcacaaagcatcaggtt
gcagaggttacatctcttggccttgtccaaatgactcgtaagcgcgttggacagggtttg
gtcgaggcgttttcggaggagtgcccgacttgcaagggtcgtgggtttattcttcacgac
gagccgactgtgtcttcggagtatgcggatccttacgcgcttaagggcggtgatccgttt
attaaaaccaataagcacggtcatggaagtattgcggaccctatgcctgtggttaagcag
gagtccagtgcggatgttcgcgccaaattagcgcgtattgctgccgctgcagcgtcgtcg
gctttcttggaggagtctttgcgcaaaagtgacgaaaaagactataacgataataaagac
gataacaataatgatgtgaatgctgtatctgcagatgacgttaataatggagacgatgca
gacgatagtgttgttgacggtgttgacggtgttgacagtgttgacagtgttgacagtgtt
gacagtgttgatgaatcttcggttgctggcgacttttctgcagtagatgcgagtagtgaa
tctgcagaaagcagtgaagaatcgcaagtagtcgggaaaattgaggaatctgaggattcg
caagaatctcaagaatctacagaaagctctcaagaatctagtgaaaactaa
DBGET
integrated database retrieval system
