Gardnerella vaginalis ATCC 14019: HMPREF0421_20383
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Entry
HMPREF0421_20383 CDS
T01344
Symbol
radA
Name
(GenBank) DNA repair protein RadA
KO
K04485
DNA repair protein RadA/Sms
Organism
gvg
Gardnerella vaginalis ATCC 14019
Brite
KEGG Orthology (KO) [BR:
gvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gvg03400
]
HMPREF0421_20383 (radA)
DNA repair and recombination proteins [BR:
gvg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HMPREF0421_20383 (radA)
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Gene cluster
GFIT
Motif
Pfam:
AAA_25
Zn_ribbon_LapB
ATPase
DnaB_C
ChlI
ABC_tran
AAA_22
Rad51
AAA_16
SLFN-g3_helicase
Lon_C
NACHT
TniB
EAD2
AAA_29
DUF7129
nSTAND3
AAA
NTPase_1
AAA_24
PAXNEB
Motif
Other DBs
NCBI-ProteinID:
ADP38465
UniProt:
E3D8S1
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All DBs
Position
complement(462323..463768)
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AA seq
481 aa
AA seq
DB search
MAAKSTTYYLCSECGWSGSKWYGRCPECGEWGTLNEFHESKATSGVSRASTRSRNAKNNI
STITNLDSSVDAQPISEITADNGMRIHTGFSEFDRVLGGGLVPGSVTLIAGEPGIGKSTL
LLETAGKIAKNCNGSAKNNAEYTKNLVLYISGEESKSQVKLRASRINAISQNLLLASTTD
LNTALALIEKYKPTLAIVDSAQTIVSSDVEGITGGSTQVREVASALIDVAKTCDIPILLV
GHVTKDGSIAGPRTLEHLVDTVCQFEGDSQTALRMLRVVKNRFGPTDEVGCFDMSGDGIE
EVPDPSGLFLSSNGDCKNEGTCVTFTLEGHRSIPIEIQALVTDSVLPAPRRAVSGVDTNR
IAMLTAVLYRHGGLNLLSKDIYVSTIAGAKAKEPACDLAIVASLASAAKNKAVLPLTCAI
GEISLTGQIRPASRMEPRIREAARIGYKRAIVCNMRKKISIPGIDIIEVENLKEALNALG
L
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaaaatctactacttactacttatgctccgaatgcggttggagtggttcaaaa
tggtatggtcgctgtccagaatgcggcgaatggggaacattaaacgagtttcacgagtct
aaagctacaagcggagtttcacgagcctccacaagatctagaaatgcaaaaaataacatt
tctacaataacaaatcttgattctagcgtagatgctcagccaatcagtgaaattacagca
gataatggcatgcgaatccacacaggatttagcgaatttgaccgcgttttaggaggaggg
cttgttccaggatcagtcacgcttatagcaggcgaaccaggaatcggaaaatctactcta
cttttagaaacagcaggaaaaattgccaagaattgcaacggatctgcgaaaaacaatgcc
gaatacacaaaaaatttagtcctgtacatttctggcgaagaatcaaagtcgcaagtaaaa
ttgcgcgcatcacgcataaatgccataagtcaaaatcttcttcttgcgtctacaacagac
ttaaacacagctttagcgctaatcgaaaaatataagccaactcttgcaattgtagattcg
gcacaaactattgtttctagcgatgttgaaggaattacaggaggctccactcaagttcga
gaagtagctagcgcgcttatagacgttgctaaaacttgcgatattccaattcttcttgtt
ggacacgttacaaaagacggctcgattgcaggtcctcgcacgcttgaacatcttgtagac
actgtttgccaatttgaaggagatagtcaaaccgcattacgcatgcttcgcgttgttaaa
aatcgttttgggcctacagacgaagttggctgcttcgacatgagtggcgatggtattgaa
gaggttccagatccttctgggcttttcctgtcttctaatggagattgtaaaaatgaagga
acgtgcgtaacttttactttagaaggacacagaagcatacctattgaaattcaggctctt
gttacagattcggttctgccagcccctagacgcgcagtttctggagtagacacaaacaga
attgccatgcttaccgctgttttatatagacatggtggattaaatcttttatctaaagac
atttacgtttctacgattgctggagctaaggcgaaagaacctgcttgcgatttagcaata
gtggcaagtttggcgagcgcagccaaaaataaggcagtcttacctttaacttgcgcaatt
ggtgagattagtcttactggtcaaattcgtccagcttctagaatggaacctagaattaga
gaagcagctaggatcggctataagcgtgcgatcgtgtgtaatatgcgaaagaaaattagc
attcccggtattgacataatcgaagtagagaatttaaaagaagctttgaacgcacttgga
ttatag
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