Gardnerella vaginalis ATCC 14019: HMPREF0421_20484
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Entry
HMPREF0421_20484 CDS
T01344
Symbol
xseB
Name
(GenBank) exodeoxyribonuclease VII, small subunit
KO
K03602
exodeoxyribonuclease VII small subunit [EC:
3.1.11.6
]
Organism
gvg
Gardnerella vaginalis ATCC 14019
Pathway
gvg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
HMPREF0421_20484 (xseB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gvg03400
]
HMPREF0421_20484 (xseB)
Enzymes [BR:
gvg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
HMPREF0421_20484 (xseB)
DNA repair and recombination proteins [BR:
gvg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
HMPREF0421_20484 (xseB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_S
LUD_dom
Motif
Other DBs
NCBI-ProteinID:
ADP38566
UniProt:
E3D922
LinkDB
All DBs
Position
595022..595330
Genome browser
AA seq
102 aa
AA seq
DB search
MSDETKDAGAKVDAISTLSSEERAAINAMPYEEAREKLVQAVKALEAGGLTLDQSMHQWE
LGEALAKRAQGLLASVRAKLDAAQAEQSATAATAGTQSNLES
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgaaacaaaagacgcaggtgcaaaagttgacgctattagcacgcttagcagt
gaagagcgggctgcgattaacgcaatgccttacgaagaggcgcgcgaaaagcttgtgcaa
gctgttaaagcacttgaggctggcggtttgactttggatcagtctatgcatcaatgggag
cttggagaagcgctagcaaagcgtgcgcagggcttgcttgcatcggttcgcgctaagttg
gacgcggctcaagcggagcagtctgctacggctgcaactgctggaacgcagtctaatctt
gaatcttga
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