Gardnerella vaginalis ATCC 14019: HMPREF0421_20519
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Entry
HMPREF0421_20519 CDS
T01344
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gvg
Gardnerella vaginalis ATCC 14019
Pathway
gvg03030
DNA replication
gvg03430
Mismatch repair
gvg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMPREF0421_20519
03430 Mismatch repair
HMPREF0421_20519
03440 Homologous recombination
HMPREF0421_20519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gvg03032
]
HMPREF0421_20519
03400 DNA repair and recombination proteins [BR:
gvg03400
]
HMPREF0421_20519
Enzymes [BR:
gvg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HMPREF0421_20519
DNA replication proteins [BR:
gvg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HMPREF0421_20519
DNA repair and recombination proteins [BR:
gvg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HMPREF0421_20519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
DUF655
tRNA_anti_2
DUF5487
Motif
Other DBs
NCBI-ProteinID:
ADP38601
UniProt:
E3D957
LinkDB
All DBs
Position
640456..644007
Genome browser
AA seq
1183 aa
AA seq
DB search
MARLETNFVHLHNHTHYSLLDGASKIPDLVARAKELGMPAVAITDHGNMHGAYEMWSTAV
KAGIKPIIGIEAYVTPETARQDKSRVHWGTEAQRSDDVSGGGLITHMTMWAENDEGLTNL
LKASSIANLEGRVMRYPRMDKDVLSRYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGE
FQDIFGRDNFFIELMNHGLSIETRVTKDLLEIAKRLNAPLLATNDLHYVHEEDREAQDAM
LCINSGSRLDDPDRFKFDGSGYYLKSAEQMRELFKEFPEACDNTLEIARRCNVMFDDGED
GAFMPQFDCPEGWDETSLFLKKVEEGLERRYNNNVPMEVLKQADYECGVICQMQFCGYFL
VVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPMKHGLIFERFLNPERVSLPDI
DVDFDPDGRAKVLEYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKITKI
LPPPKNGKDMSFHDIFDEKSKRYAEAREFREMYDTDPDTKRITEEAKGIEGLIRQTGVHA
CATIMGSEPITDTSPLLERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTVIRDTLKNVE
HNGKEPIDYTKIPLDDKETYQLLARGDTLGVFQLDSDGMRALLRTLKPDNFNDISALIAL
YRPGPMDMDSHTNYAKRKNGLQEITPIHPEVAEPLKDVLGETYGLIVYQEQVQSAARILA
GYSLGKADVLRRAMGKKKPEVLAKEKIPFFKGMKEHGYSEEAAQAVWDVLVPFSGYAFNK
AHSAAYGLISYWTAYLKTHYPVEFMAALLQNERTNKDKTALYLGEARRMGIRVLQPDINE
SVLEYSAVGDVVRFGLGAVRNVGDKAVNDIISERESERGKFIDFKDFVNRVSFAALNRRL
VESLIKSGAFDSINPCRRAIFEICEPLIDSVISIKRRQAGGQFDLFADLDDSDSDLGDAQ
INIPDVEEWDKKTKLNFEREMLGLYVSDHPLSGLSAVLAGLREMSIAQLLNRAKTMGENQ
QVTLAGLVTSVDRRVSKKGNAWAIVTIEDMESSIQCMFFGKVYESSAAELAIDQVVRIRG
QVEVRDETVSLRATEFEVPSLEAEDAQPVTIVLPLQALEKSRIKELENIVTRHPGCCEMN
LALIDSRGCAKVLSFGDRFRVKRDTSLFAEIKILFGPNCLPSA
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atggctaggttggaaacaaacttcgtacacttacataatcacacgcattattcgcttttg
gatggtgcttcgaagataccagacctagttgcacgtgcaaaagaattaggtatgccagct
gtggctattacagaccacggaaatatgcatggtgcatacgaaatgtggagtactgctgta
aaagctggaattaagccgattattggaatcgaagcttatgtgacccctgaaacagccaga
caagacaagagcagagtgcattggggaactgaagcgcaaagaagcgacgatgtttctggc
ggcggtttgattacgcacatgacaatgtgggctgaaaatgatgaaggcttaacaaatcta
ctcaaagcgtcttctatagctaatttagaaggtcgcgtaatgcgataccctcgaatggat
aaagatgtgttatcaaggtattctaaaggggttatagcgtcttctggatgcccatctggt
attatccaaacgcgtcttcgtttaggtcaatttgatgaggctttacgcgctgcaggcgag
tttcaggatatttttgggcgcgataatttctttatagaattaatgaatcatgggctttct
atcgaaacgcgcgttactaaagatttgcttgagattgctaagcgtcttaatgcgcctctt
cttgctacaaacgatttgcattacgtgcacgaagaagatcgcgaagcgcaagatgcaatg
ctatgcattaattcaggatcgcgcttggatgatccagaccgttttaagtttgatggctct
ggatactatttaaaatctgccgagcagatgcgtgaattgtttaaagagtttccagaggct
tgtgacaatacgctagaaattgcccgtcgttgtaacgttatgttcgacgatggtgaagat
ggcgcttttatgccgcaatttgattgccctgaaggttgggatgagacttcgctattcctt
aaaaaagttgaagaaggattagagcgtagatataacaacaatgttcctatggaagtctta
aaacaagcagactacgagtgtggtgttatatgtcaaatgcagttctgcggatacttccta
gttgttgcggactacataaattgggcaaaagcacatggtgttatggttggtcctggacgt
ggttctgcagcaggcgcaatggttgcgtatgctatgggaattactgagcttgacccaatg
aagcatggtctgatttttgaacgattcctaaacccagagcgagtatctttaccagatatt
gatgttgactttgacccagatggtagagccaaagttttggaatacgtcggtgaaaaatat
ggaagagataaagtagctcaatgcgtgatttatggaacgattaaaacaaagcaagcattg
aaggattcagctcgaataatgggctacgagttttccgttggagaaaaaattacaaaaatt
ctgcctcctccaaaaaacggaaaagatatgagtttccacgatatttttgatgaaaaatca
aagagatacgcggaggcgcgcgagtttcgcgaaatgtatgacactgatccagatacgaag
cgaattactgaagaagcaaaaggtattgaaggtttgattcgccaaactggtgttcatgct
tgcgcaacaatcatgggctcggagccgattactgatacttcgcctcttttggagcgtact
gatggaacaataacaacaacgttcgagtatcatacttgcgaaacgttgggcttagtgaaa
atggactttttgggtctttccaacttaacagttattagggatacgcttaaaaatgttgag
cataatggtaaagagcctattgattacactaaaattccgcttgacgataaggaaacatat
cagcttcttgctaggggagacactttaggagtcttccagcttgattccgacggtatgcgt
gcccttctgcgcacacttaagccagataactttaacgatatatcggctttgattgcactt
tatagaccaggtcctatggatatggattctcacactaactacgccaagcgtaagaatggt
ttacaagagataacgcctatccatcctgaagttgctgagccgctaaaagatgttcttggc
gaaacatatggtttgattgtttaccaggagcaggtgcagtcagctgcgcgtattttagct
gggtatagccttggtaaagcagatgttttgcgtcgagcaatgggtaaaaagaagccagaa
gtgttggctaaagaaaaaatcccgttctttaaaggcatgaaagaacatggttattcagaa
gaagctgcacaagctgtttgggatgttctggttcctttttctggttacgcgtttaacaag
gctcattcagccgcatacggtttgatttcttattggactgcgtatttgaaaacgcattat
cctgtggagtttatggctgcattgcttcaaaacgagcgcacgaataaggataagacagcg
ctctacttgggtgaagctagacgcatgggtattcgtgttttgcagccagatattaacgag
tctgttcttgaatattctgcagttggagatgtagttcgttttggacttggagctgttagg
aatgttggtgataaagccgttaacgatattattagcgaaagggaaagcgagcgcggaaag
tttattgattttaaggattttgtaaaccgtgtatcttttgccgctttgaatcgtagactt
gtcgaatctcttattaaatctggtgcttttgattcaattaatccttgtagaagagctatt
tttgaaatttgtgaaccactaattgactctgttatttctattaagcgcagacaggcaggt
ggtcagtttgatctttttgctgatcttgatgattccgatagtgatcttggagatgctcaa
atcaacattccagatgttgaagaatgggataaaaaaacgaagctaaactttgagcgagaa
atgcttgggctttacgtttcggatcatcctttgagtggtctttctgctgtgctggctggt
cttagggaaatgtcgattgctcagcttttaaatcgcgctaaaactatgggcgaaaatcag
caggtaactcttgcaggccttgtgactagcgtagacaggcgagtatctaaaaaaggtaat
gcttgggcgattgtaactattgaagacatggaaagttcaatacaatgcatgttctttggt
aaggtctatgagtcatctgctgcagaacttgcgattgatcaagttgtgagaattagggga
caggtagaggttcgagacgaaacagtgtctttaagagcaactgagtttgaagttccaagc
ttagaggcggaagatgctcagcctgttacaattgttcttcctttgcaagcattagaaaag
tcacgtataaaagagcttgaaaatattgttacaagacatcctggttgttgcgaaatgaat
cttgctttgattgattctagaggatgcgcaaaagtgttatcgtttggagatagatttaga
gttaagcgagatacgtcactttttgcagagatcaaaatattgtttggtcctaattgtttg
ccaagcgcgtag
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integrated database retrieval system
