Gardnerella vaginalis ATCC 14019: HMPREF0421_20642
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Entry
HMPREF0421_20642 CDS
T01344
Symbol
hup
Name
(GenBank) DNA-binding protein HB1
KO
K03530
DNA-binding protein HU-beta
Organism
gvg
Gardnerella vaginalis ATCC 14019
Brite
KEGG Orthology (KO) [BR:
gvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gvg03032
]
HMPREF0421_20642 (hup)
03036 Chromosome and associated proteins [BR:
gvg03036
]
HMPREF0421_20642 (hup)
03400 DNA repair and recombination proteins [BR:
gvg03400
]
HMPREF0421_20642 (hup)
DNA replication proteins [BR:
gvg03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
HMPREF0421_20642 (hup)
Chromosome and associated proteins [BR:
gvg03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
HMPREF0421_20642 (hup)
DNA repair and recombination proteins [BR:
gvg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
HMPREF0421_20642 (hup)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_2
Motif
Other DBs
NCBI-ProteinID:
ADP38724
UniProt:
E3D9I0
LinkDB
All DBs
Position
complement(797000..797317)
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AA seq
105 aa
AA seq
DB search
MEEKAPNTKDACMAYNKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEALQSGEGLKLTG
LFSAERVKRAERTGRNPRTGETIKIPASYGVRISAGSLLKKAVTE
NT seq
318 nt
NT seq
+upstream
nt +downstream
nt
ttggaagagaaggcccctaacacaaaggatgcttgtatggcatacaacaagtctgatctc
gtttcgaagatcgctcagaagtccaaccttaccaaggcacaggccgaggccgctgtcaac
gcattccaggatgtgttcgttgaggctttgcagtctggtgaaggcttgaagctcactggc
ctgttctccgctgagcgtgtaaagcgcgctgagcgcactggccgcaacccacgcactggc
gaaaccattaagattcctgcatcttacggtgttagaatctccgctggttctttgctcaag
aaggcagttactgagtag
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