Gardnerella vaginalis ATCC 14019: HMPREF0421_20714
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Entry
HMPREF0421_20714 CDS
T01344
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gvg
Gardnerella vaginalis ATCC 14019
Pathway
gvg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HMPREF0421_20714 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gvg03400
]
HMPREF0421_20714 (mfd)
Enzymes [BR:
gvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMPREF0421_20714 (mfd)
DNA repair and recombination proteins [BR:
gvg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HMPREF0421_20714 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AroM
nSTAND3
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
ADP38796
UniProt:
E3D9Q2
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All DBs
Position
881771..885373
Genome browser
AA seq
1200 aa
AA seq
DB search
MANKSDFFANNMSDSKDFINSNVSFENILKDILDKNEAFKSLVSNVLDFPNPLTVASPLG
SRPAIAAAISKSSPVVLITPSGRDASDAVSSIRDWYDGDPQDIAELEAWETLPHERLSPR
ADTVASRMSVFRRLKHPQSGKNRMFSPIRVLVMPVRSIIQPVVENISDVEPLVFECGKEV
PIDSAVKRLVENSYNRVELVMNRGEFAVRGGIIDVFSPTMNHPVRIEFFGDEIDTIKQFH
ASDQRTYGENINSIWATACRELQLTKDIQNRAKSLIGKIQNADDMLESISNAIPVEGMES
LLPALVDKMEPVENLLPKNSIILISDPEKCRRAAQDLSRTANEFLAASWHVAASGRGAGA
PITFDQASFLDFDETLASLENKNHQVINLTSFGSDKSPATVDIKESSENKIVKNSRLELS
IKSPQEFRGDNEKISSGISGLIANGFKVYIIASAYGTLSRLSRAIQSTGIFDFVPIQSQI
VDGFIDEQSKIAILTERDLTGKTSSASALKTPRRRRKSIDLLDLKPGDFVVHDQHGIGKF
IGMRQRNIKTSSGEATREYLEIEYAPSKRNAPADKLFIPTDQLDLVSKYIGAEIPKLNKL
GGSDWAATKAKARKHVQEVAEDLIKLYSARASTKGFAFSSDTPWQKELEDAFPYQETPDQ
LTTIDEVKQDMQKPIPMDRLICGDVGFGKTEIAVRAAFKAVQDGKQVVVLAPTTLLVQQH
YETFTNRFSGFPVTVAAMSRFQSAKEIDATMQGIESGQVDVVVGTHKLLNPNIKFKDLGL
VIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP
VLTYVGAYEDAQVAACVKRELLRGGQVFYVHNRVEDISKIASNIQKLVPDARVAIAHGKM
GEKQLDTIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQLRGRVGR
GRERAYAYFLYDPTKPMTQQAHDRLATIAQYTALGSGFDVAMKDLELRGTGNLLGDAQSG
HIEGVGFDLYVRMVSEAVEKYKEPDHKESISVSIDLPIEASIPVSYIDSDKLRLEAYRKL
AEAQNDEDLKEIFNELSDRYGNPPKSLQTLFDVARLRFKAKQMGINQISMQGKTVRVIGV
DPAQSVWMRLSRIYRGAQFKPVTHTMIFPSPFASVLGDSSSMSEKEIVEWAKQLLEDIDW
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atggcaaataaatctgatttttttgctaacaatatgtcagattctaaagattttataaat
tctaacgtttcttttgaaaatatacttaaagatattttagataaaaatgaagcgtttaaa
tctttagtttctaacgtgctagattttccgaatccgcttactgtagcatctcctttaggt
tctagacctgctatagcagctgcaatatcaaagagtagtcctgttgtactaattactcca
tctggtagagatgctagtgacgctgtttcttcaatacgcgattggtatgatggagatcct
caggatattgccgaactcgaggcttgggagactcttcctcatgagcgtctttctcctaga
gcagacactgtggcaagtagaatgtcggtttttagaagattaaaacatcctcaaagtggc
aaaaatagaatgtttagcccaattcgtgtgcttgttatgccagttcgttctattattcag
ccagttgttgaaaatatttcagacgtggagcctcttgtttttgaatgtggtaaagaagtt
cctatagattctgctgtaaaacgtcttgttgaaaactcatataatcgcgttgagttggtt
atgaatcgtggagaatttgcagttagaggtggaataatagatgttttttctccaacgatg
aatcatcctgttagaatcgaattttttggagacgaaatcgacacgattaagcagtttcat
gcatctgatcaacgcacatacggtgagaatattaatagtatttgggctactgcttgtaga
gaattacagcttacaaaagatattcaaaatcgtgcaaaatctttgattggtaaaattcaa
aatgctgacgacatgttggaatccatatcgaatgcaataccagtagagggtatggagtcg
ttgcttccagcattagttgacaaaatggaaccagtagaaaatctgcttccaaaaaattct
ataatattgatttctgacccagaaaaatgtaggcgcgcagctcaagatttaagtagaact
gctaatgaatttttggcagcaagctggcatgtagctgcatctggtagaggagcaggtgct
ccaataacattcgatcaggcgagttttcttgattttgatgaaactttagcaagcttagaa
aataagaatcatcaggtaataaatttaacgagttttggatctgataagtcgccagcaacc
gtagatattaaagaatctagcgaaaataaaattgtaaaaaatagccgtctagaattgagc
attaaatctcctcaagaatttagaggagacaatgaaaagatttctagtggaatatctggt
cttatagcaaacggatttaaagtttacataattgcatccgcatatggaaccttatctaga
ctaagtcgcgcaatacaatcaactggaatttttgattttgtaccgattcaatcgcaaata
gtggacggattcatagatgaacaaagtaaaatcgctattcttacagaaagagatttgact
ggaaaaacatcttctgcaagcgcgcttaaaactcctaggagaagacgaaaatcaatagac
cttctagatcttaaaccaggcgattttgttgttcacgatcagcatggaatcggcaaattt
ataggcatgaggcagcgaaatataaaaacctcaagtggagaagctactcgtgaatacttg
gaaattgaatacgcgccaagtaaacgtaatgcgcctgccgacaagctttttattccaacc
gatcaactcgacttggttagcaaatatattggggctgaaattccaaagttaaacaaactt
ggaggatcagattgggctgctacaaaggcaaaagctagaaagcatgttcaagaagttgca
gaggatttaatcaaattatattcagccagagcatctactaaaggttttgccttcagctct
gacactccgtggcaaaaagagctggaagatgcatttccgtatcaagaaacgccggatcag
cttactactattgacgaagttaaacaagatatgcagaagccaattccaatggataggttg
atttgcggagatgttgggtttggtaaaacggaaattgctgttcgagctgcatttaaagct
gttcaagacggtaaacaagtagttgttctagcgccaaccactcttttggttcagcagcat
tacgagacttttactaaccgtttttctggcttccctgtaacagttgccgcaatgagcaga
ttccagagtgcaaaagaaatagacgctacaatgcaaggaatagaatccgggcaagtagat
gttgttgttggaactcataaacttttaaatccaaatataaaatttaaagatttaggatta
gtgattatagacgaagaacaacgttttggtgttgagcacaaggagactttgaaagctcta
cgaacaaatgtagatgtgcttagcctttctgcaacgcctattcctagaacgcttgaaatg
gctgttacgggtattcgtgaaatgtctacgcttgctacgcctccagaagatcgtctacca
gtcttgacttatgttggagcatatgaagatgcacaagttgcagcctgtgttaaacgtgaa
ttattgcgtggaggacaagtattttacgttcataatcgcgtagaagatattagtaaaatt
gcctctaatattcaaaaacttgtgccagatgctcgagtggcgattgcacacggaaaaatg
ggcgagaagcaacttgacactattattcgtgatttttggcatagggatattgatgttctt
gtttgcactacgattattgaaacaggattagatatttctaatgcaaatacgcttattgta
gatcacgctgacagattcggtttaagtcagcttcatcaattacgagggcgagttggcaga
ggtcgtgagcgcgcatacgcatactttttgtacgatcctactaagcctatgactcagcag
gctcacgacaggcttgcaacaatcgctcaatatactgctcttggctctggttttgatgtt
gctatgaaggatttggaattgcgcggaactggcaatttgcttggagatgctcagagtggg
catattgaaggagtcggattcgatttatatgttcggatggtatctgaagctgttgaaaaa
tataaggaaccagatcataaagagtccatatctgtttctattgatttgccaatagaagcc
tcaattccagtatcttatattgattcagataaattacgtttggaagcttataggaagctt
gctgaggctcagaatgatgaagacttaaaagagattttcaatgagttaagcgatagatat
ggaaatcctcctaaatccttacaaacattatttgatgttgcaagattacgttttaaagct
aaacaaatgggtattaatcaaataagcatgcaaggtaaaactgtgcgcgttattggcgta
gatccagctcaatctgtttggatgcgtttgagtaggatctacaggggagcacagtttaag
cctgtaacccacacaatgatttttccatctccttttgcgtctgttttaggggattcatcg
tctatgagtgaaaaagagatagtcgaatgggctaagcaacttttagaagacattgattgg
taa
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