Gardnerella vaginalis ATCC 14019: HMPREF0421_20727
Help
Entry
HMPREF0421_20727 CDS
T01344
Name
(GenBank) AMP-binding enzyme
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
gvg
Gardnerella vaginalis ATCC 14019
Pathway
gvg00061
Fatty acid biosynthesis
gvg00071
Fatty acid degradation
gvg01100
Metabolic pathways
gvg01212
Fatty acid metabolism
gvg02024
Quorum sensing
gvg04146
Peroxisome
Module
gvg_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
gvg00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
HMPREF0421_20727
00071 Fatty acid degradation
HMPREF0421_20727
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
HMPREF0421_20727
09145 Cellular community - prokaryotes
02024 Quorum sensing
HMPREF0421_20727
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
gvg01004
]
HMPREF0421_20727
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gvg04147
]
HMPREF0421_20727
Enzymes [BR:
gvg01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
HMPREF0421_20727
Lipid biosynthesis proteins [BR:
gvg01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
HMPREF0421_20727
Exosome [BR:
gvg04147
]
Exosomal proteins
Exosomal proteins of breast milk
HMPREF0421_20727
Exosomal proteins of breast cancer cells
HMPREF0421_20727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
BPL_C
Motif
Other DBs
NCBI-ProteinID:
ADP38809
UniProt:
E3D9R5
LinkDB
All DBs
Position
900004..901794
Genome browser
AA seq
596 aa
AA seq
DB search
MRKLITMQTFFSLLESRVERKPNDSLVEYVGRDGEWNSYSAKDFKDLVISVAKGFIAHGV
MPGDTISIIAHTSWQWTVLDMAIMSIGALTVPIYETSSAVQIENIINDSRVSMIFVEDEN
MRETVEISKKSCPSLNDVYVLSRDAIDALIEYGKTVTDSEFYEREKAVKGDDLATIVYTS
GSTGDPKGIELSHGNFVFIAKSGMLSMPDIALKGKPRLLLFLPLAHVFARFMQFFCFAGN
VTLGLSSNLKTILSDFKSFKPTFILGVPRIFEKIYNAASQKAGRGVKGFIFAQSVKVAKE
WSKAQQSGRMISPMLAISHSLCKKLVYNSILQVFGGDVEYGVSGGAPLDKSISHFFNGMG
LPILEGYGMTETCAPSMVNPTKGYKIGTVGLPVQGVSVAIDDEGELCIKSPAVCKGYHNH
PEITEKQIVNGWLHTGDFGSLDSDGFVKITGRKKDLIITAGGKNVSPSILEASVMTSSII
SQCVVIGDRKPFISAIIALDLAEVNSWLKSRGASPVRSLEEARKNSIVISSVEQSIVKAN
SNVSRAESIRKFEIVPDAFTQENGLVTPSLKAKRNAVIERYNDLIENKIYAPRPRK
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaattgattacaatgcaaacatttttttcgcttcttgaaagtcgcgtagaacgt
aagccgaacgattcattggttgagtatgtaggacgcgacggggaatggaattcctacagt
gctaaagactttaaagatttggttatatcggtagcaaaaggattcatagcacacggtgtg
atgccgggagatactatatcgataatagcgcatacttcatggcagtggactgtgcttgat
atggcaataatgtctataggcgcgttaacagtgccaatttatgaaacaagttctgcagtg
caaatagaaaatattattaacgattctagagtaagcatgatttttgttgaagatgaaaat
atgcgtgaaactgtggaaatatcaaagaagtcatgtccaagccttaacgatgtctatgta
ttaagcagagacgcaatagatgcgctaattgagtatggaaaaacagttacagactcagag
ttttatgaaagagaaaaagctgttaaaggcgatgatctagctacaatcgtttacacatct
ggatctacaggagacccgaaaggtatagaactttcgcacggaaattttgtgtttatagcg
aaatctggaatgctttccatgccagatatagcattaaaaggcaaaccaagacttctttta
ttccttcctttagcacatgtatttgcaagatttatgcagttcttctgttttgctggaaat
gtaacacttggattgtcaagcaaccttaaaacaatactaagtgattttaaaagttttaaa
ccaactttcatacttggtgtacctagaatatttgaaaaaatctacaatgctgcctctcaa
aaagctggtagaggagtaaaaggatttatatttgctcaaagcgtaaaagtggcaaaagaa
tggtcaaaagctcaacaatcggggagaatgatttcgccaatgctggctataagccactcc
ttatgtaaaaagctcgtttacaactcaattttgcaagtttttggaggagacgttgaatat
ggtgtttcaggaggagcaccattagacaaatcgatttcgcatttcttcaatggcatggga
ttgccaattctcgaagggtacggaatgacagaaacatgtgctccgtcaatggtaaatcca
acgaaaggctataaaatcggaacagttggtttgccagtacagggagtgtctgtagcaata
gatgatgagggagagctttgtattaaaagtcccgctgtttgcaaaggatatcataatcat
ccagagataactgaaaaacaaatagtaaatggatggttgcatacaggagacttcggatct
ttagattccgacggttttgtaaaaattactggtcgcaaaaaagatctgataataacagct
ggcgggaaaaacgtttcacctagcatactcgaagcatcagttatgacttcttcaattatt
tctcaatgcgttgttattggagacagaaaaccttttatctctgcgattattgcgttagat
cttgcagaagtgaattcttggctgaaatctcgaggagcaagcccagtgcgctcgctggaa
gaggcaagaaaaaattcaatcgtcataagttccgtagaacaaagcatagttaaagcaaat
tctaatgtttctagagcagaatcaatcagaaaatttgagattgttccagatgcttttact
caagaaaatggtttagttacaccaagccttaaagcaaagcgcaatgcggttatagaacgt
tataacgatcttatcgaaaataagatttacgctccaagaccaagaaaataa
DBGET
integrated database retrieval system
