Gardnerella vaginalis ATCC 14019: HMPREF0421_20758
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Entry
HMPREF0421_20758 CDS
T01344
Symbol
carB
Name
(GenBank) carbamoyl-phosphate synthase, large subunit
KO
K01955
carbamoyl-phosphate synthase large subunit [EC:
6.3.5.5
]
Organism
gvg
Gardnerella vaginalis ATCC 14019
Pathway
gvg00220
Arginine biosynthesis
gvg00240
Pyrimidine metabolism
gvg00250
Alanine, aspartate and glutamate metabolism
gvg01100
Metabolic pathways
gvg01110
Biosynthesis of secondary metabolites
gvg01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
gvg00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
HMPREF0421_20758 (carB)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
HMPREF0421_20758 (carB)
00220 Arginine biosynthesis
HMPREF0421_20758 (carB)
Enzymes [BR:
gvg01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.5 Carbon-nitrogen ligases with glutamine as amido-N-donor
6.3.5.5 carbamoyl-phosphate synthase (glutamine-hydrolysing)
HMPREF0421_20758 (carB)
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Gene cluster
GFIT
Motif
Pfam:
CPSase_L_D2
CPSase_L_D1
CPSase_L_D3
MGS
Dala_Dala_lig_C
ATP-grasp
GARS_A
ATP-grasp_4
ATPgrasp_Ter
ATP-grasp_2
RimK
CoA_binding_2
Arc_PepC
Motif
Other DBs
NCBI-ProteinID:
ADP38840
UniProt:
E3D9U6
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All DBs
Position
934798..938193
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AA seq
1131 aa
AA seq
DB search
MPKRADIKSVMVIGSGPIVIGQAAEFDYSGTQACRVLHEEGIRVILVNSNPATIMTDPEL
ADATYIEPIDTAILERIIAKEKPDALLPTLGGQTALNAAMDLGRAGILKKYNVELIGASL
EAIDRGEDRELFKKVVEKAGAESAKSFIAHSIEEVDKIVETLGYPVVVRPSFTMGGLGSG
IAHNQEELHRIAGAGIHYSPTNEVLIEEGIEGWKEFELELMRDSKDNVVVVCPIENVDPV
GVHTGDSITVAPCFTLTDREYQKMRDIGIAIIRGVGVDTGGCNIQFAINPRTGRIIVIEM
NPRVSRSSALASKATGFPIAKIATKLALGYTLDEIQNDITRSTPASFEPTIDYVVTKIPR
FAFEKFPGADTTLTTSMKSVGEAMALAGNFQESLGKAMRSIDKRHACFNWDGERPSKEEV
AKLLEEIHTPTEHRYLQIQRALWGGATPEQIFDATKIDPWFVEQLSLINKTALEVREAEN
LTPKVLKNAKLAGLSDVQIAHLRNLGDEGENMVRELRWAYGLHPVYKTVDTCAAEFDAVT
PYYYSCYADESELKPRDRDAVIILGSGPNRIGQGIEFDYTCVHAVQELGKDYDTIMVNCN
PETVSTDYDMSDRLYFEPLTFEDVLEIYQAEKKLGPVKGVIVQLGGQTPLSLAARLKAAG
VPILGTTPEAIDLAENRELFGEVLRQEGMNAPRYGTALSLEEAKDAAHAIGYPVLVRPSY
VLGGRGMEIVYDDAQLAKYVDRALQEAQADTVVSGRLPSPLLIDKFLQDAIEIDVDALYD
GNELYIGGIMEHVEEAGVHSGDAACTLPPSTLSDDQIRRLREGTLSIARGCSVRGLINVQ
YAFMANTLYVIEANPRASRTVPFASKATGVALAKAAARIMAGETIAQQRKRGLLLPKGDG
GDIHPGQQVAIKASVLPFKRFRTPVGRTVDILLGPEMRSTGEVMGFDRDFPHAFAKSQLA
AYKGGLPTSGNVFVSVSDADKRQLPLLAVRLVELGFTIWATEGTASVLRRYGIDSVIVDK
LSSLGDTAKDVRNAEPSHERIGKNVVELIENGKIDMVLNTPNSRGSRTDGYAIRAAAVAA
DLPQFTTITEFAPVLMAIEAVKNNDYQVMSIQEHAKQLFAIEKAENEESRA
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacgtgctgatattaaatccgtaatggttattggttctggtccaatcgtaatt
ggtcaggctgcagaattcgactactctggaacgcaagcttgccgagtacttcacgaagaa
ggaatccgcgtaattcttgtaaactctaatcctgctactattatgacggacccagagctt
gcagacgcaacatatattgagccaatagacacggcaattttggagcgcattattgctaaa
gagaagccagatgcgcttcttccaacattaggtggtcaaactgctcttaatgccgcaatg
gacttgggtcgtgcaggaatcttaaaaaagtataatgtagagcttattggtgcatctttg
gaagcaatcgaccgcggagaagaccgtgagcttttcaaaaaagttgttgaaaaagctggg
gcagaaagtgcaaaatcctttattgctcactcaattgaagaagtagacaaaattgttgaa
acactagggtacccagttgttgtgcgtccaagcttcacaatgggaggtttaggctctgga
attgctcacaatcaggaagaattacaccgcattgcaggagcaggcattcactattctcca
acaaacgaagtgcttattgaagaaggcattgaaggttggaaggaatttgagcttgagctt
atgcgagattccaaagacaatgttgttgttgtgtgcccaatcgaaaatgttgatcctgta
ggcgttcacacaggcgactcgattacagttgctccatgctttacgctaacagatcgcgag
tatcaaaagatgcgtgatattggcatcgcgattattcgaggtgttggcgttgacactggc
ggatgcaatattcagttcgcaatcaatcctcgaactggtcgcattatcgtaatcgaaatg
aatccgcgagtttcgcgttcttctgcgctagcatctaaagcaactggtttcccgattgca
aaaatcgctacaaaacttgccctcgggtacactttggacgaaattcaaaacgatattacg
cgttcaactcctgcaagctttgagccaacgattgactatgtggtaactaagattccgcgc
tttgcttttgaaaagttccctggagcagacactacgcttacaacttctatgaagtcagtc
ggcgaagcaatggctttggctgggaatttccaggaatctcttggcaaagcaatgcgatca
atcgataaacgtcacgcttgctttaattgggacggcgagcgcccaagtaaagaagaagtt
gctaagcttcttgaagaaattcatactccaaccgagcaccgctacttgcaaattcagcgc
gcgctctggggtggggctacgcctgagcagatttttgacgcaacaaagatagacccatgg
tttgttgagcagctttcgttaatcaataaaacagctttagaggttcgtgaagcagaaaat
ttgacgccaaaagtgttaaagaatgctaagcttgctggtctttcggatgttcaaattgcg
catttgcgtaatcttggcgacgaaggcgaaaacatggttcgtgagctgcgttgggcgtat
ggattgcatcctgtttacaaaacggttgacacttgcgctgccgagttcgacgctgtaaca
ccttactactattcttgctacgctgacgaaagcgagcttaagccacgcgatcgtgacgct
gtaatcattcttggctctggtccaaacagaataggtcagggtattgagtttgactacact
tgcgttcatgctgtgcaagagctgggtaaggattacgacacaatcatggtcaattgcaat
cctgaaacagtttctacagactacgatatgtcggatcgcctttactttgagccgcttact
tttgaagacgtgctcgaaatttaccaagcagaaaagaagcttggtccagtaaaaggtgtt
attgtgcaacttggcggccaaactccactttcgcttgctgcacgtcttaaagctgcagga
gttccaattttgggcactacgcctgaggctattgatttggcggaaaatcgtgagcttttc
ggtgaggttcttcgtcaagaaggcatgaatgctccgcgctacggaactgcattaagcctt
gaagaggctaaagatgctgctcacgcaattggttaccctgttcttgtgcgaccaagttat
gtgcttggcggtcgaggaatggaaatcgtgtacgatgatgctcagcttgcaaaatatgtg
gatcgtgctttacaggaagctcaagcagacactgttgtttctggtcgtttgccttcgccg
cttttgattgataaattccttcaggacgctattgagattgatgttgacgcactttacgac
ggcaatgagctttatattggcggaattatggagcatgttgaggaagctggcgtacactct
ggtgacgctgcttgtactcttcctccaagcacgctttccgacgatcaaattcgtagactt
cgcgagggcacgctttcgattgctcgcggatgctcagttcgtggtcttattaatgtgcaa
tatgcttttatggcaaacactttgtacgtaattgaggcgaatcctcgagcatctcgtact
gttccgtttgcgtctaaagctacgggagttgctcttgctaaagctgctgctcgaattatg
gctggggaaacaatcgcacagcagcgaaagcgcggtcttcttcttcctaagggagatggt
ggagatattcacccaggccagcaagttgctattaaagcttccgtcttgcctttcaaacgt
ttccgcacgcctgttggtcgcacagtcgatattttgctcggaccagagatgcgctctact
ggagaagttatgggctttgaccgcgacttcccacatgcttttgctaagagtcagcttgca
gcgtacaagggcggtttgcctacaagcggcaacgtgtttgtgtctgtaagtgatgcagat
aaaagacaattgccgctacttgcagtgcgcctagtagagcttggatttacgatttgggct
acagaaggtacggcatctgttcttagacgttacggcattgattccgttattgttgataag
ctttctagccttggcgacacggcgaaggatgtgcgaaatgctgagccttcgcatgaaaga
atcggcaaaaacgtggttgagctgattgagaatggtaagattgatatggtgttgaacacg
ccgaattcaagagggtcgcgtacagatggttatgctattcgtgcagctgctgttgcagca
gaccttccgcaattcactacaattacggagtttgcaccagttcttatggctatagaagcc
gttaagaacaacgattaccaagtgatgagcattcaggagcatgcaaagcaactgtttgca
atcgagaaggcagaaaacgaagaaagtcgggcttaa
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