Gardnerella vaginalis ATCC 14019: HMPREF0421_20952
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Entry
HMPREF0421_20952 CDS
T01344
Name
(GenBank) AMP-binding enzyme
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
gvg
Gardnerella vaginalis ATCC 14019
Pathway
gvg00061
Fatty acid biosynthesis
gvg00071
Fatty acid degradation
gvg01100
Metabolic pathways
gvg01212
Fatty acid metabolism
gvg02024
Quorum sensing
gvg04146
Peroxisome
Module
gvg_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
gvg00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
HMPREF0421_20952
00071 Fatty acid degradation
HMPREF0421_20952
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
HMPREF0421_20952
09145 Cellular community - prokaryotes
02024 Quorum sensing
HMPREF0421_20952
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
gvg01004
]
HMPREF0421_20952
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gvg04147
]
HMPREF0421_20952
Enzymes [BR:
gvg01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
HMPREF0421_20952
Lipid biosynthesis proteins [BR:
gvg01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
HMPREF0421_20952
Exosome [BR:
gvg04147
]
Exosomal proteins
Exosomal proteins of breast milk
HMPREF0421_20952
Exosomal proteins of breast cancer cells
HMPREF0421_20952
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
ADP39034
UniProt:
E3DAE0
LinkDB
All DBs
Position
1171059..1173125
Genome browser
AA seq
688 aa
AA seq
DB search
MSVLNTLQQQAFNLARKALQIGSNFAHPVSDDIAGEPDYSIPQDQQDGSQNKQNNLLQQN
QYLPRVDEWGSQLQTTTFLDPQTGLLTTKTDGNPPLDEGTSIYDLYADRAARMGDDPLYT
YKENDEWVTKTANQFLTEVRKAAKGLIHYGLRKGDAVALMCKTSYEWDVVDAAVMACGGV
LATIYDTDSAEQIRNIVNNSDSRFLIVGTTEMKDKADGAIEECPSLERIICIETGGLAEL
QAFEYSVSDEELDERIDSVKKTDLCSIVYTSGSTAAPKGVEMTHEHYCTTALNLPTYLPD
LLSEPNGSVLLFLPQAHSFARAINYIVVASTLRIYIAQGITTLISDLQVAKPTVMIVVPR
VLEKVYNAASQKAGHGAKGLAFQGAVVTAQQYMKEVQDSGDAKALTKARRAAYDPLVYRP
IRQALGGRARWIVAGGAPLDPELLAFFRGAGVPVYEGYGLTETTAPCAFTPIGVPFREGS
VGIAFPAFTLRIAKDGEVQIKGTCVFKKYHKNEEATETSFTEDGWYATGDLGRIDDDGML
YITGRKKDLIITAGGKNVAPGPIEEVIKRCELVSQALVLGDKRPFISALVTLDEEILRNW
LKTKGLDETMSMEDAANNAVVRAEIQKFVDIANEDVSRAESVRKFIILPEEFTQENGLMT
ASMKIIRPRVIKKYANLLNTQMYTIRKK
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtcctaaatacactccagcagcaagctttcaatcttgctcgtaaggctttgcaa
attggcagcaacttcgcgcacccagtaagcgacgacatcgcaggagaaccagactattct
attccacaagatcagcaagacggatcacagaataaacagaataatctgcttcagcaaaat
cagtatcttccacgagtagacgaatggggttctcaactacaaaccaccactttcctagac
ccacaaactggcttgctaaccacaaaaacggacggaaatccgccattagacgaaggcaca
agcatctacgacttgtatgcagacagggcagcaagaatgggagatgatccactttacaca
tacaaagaaaacgatgaatgggttacaaaaacagccaaccagttccttacagaagttaga
aaagccgcaaaaggcttgattcactatggattgcgcaaaggcgacgctgttgcgttaatg
tgcaaaacctcgtatgagtgggatgttgttgatgctgcagttatggcttgcggaggcgtg
ttggctacaatttacgatacggattctgccgagcaaattcgcaacattgtaaacaactcc
gactcgcgctttttgattgttggcacaactgaaatgaaagacaaggcagatggagctatt
gaagaatgcccaagccttgagcgcattatttgcatagaaacaggcggattggcggaacta
caagcctttgaatactccgttagcgacgaagaactagacgagcgaattgactcggttaaa
aaaaccgacttgtgctctattgtgtacacttctggctctacggctgcgccaaaaggcgtg
gaaatgacgcatgagcattactgcacaaccgcgttaaacttgccaacttacttgccggac
ttgcttagcgagcctaacggttctgtgcttctattcttacctcaagcccattcgtttgcg
cgtgcaatcaactatattgttgttgctagcacgcttagaatctacattgcgcaaggcatt
acaacgcttatatctgaccttcaagtcgcaaaaccaacagttatgattgttgttcctcgt
gtgctcgaaaaagtgtataatgcggcttcgcaaaaggcaggtcatggtgctaagggactt
gctttccagggtgctgttgttacagctcagcaatacatgaaggaagtacaggattctgga
gacgctaaggcgctaacaaaggctcgccgcgctgcttacgatccactggtttaccgcccg
attcgccaagcgcttggtgggcgtgcgcgctggattgttgctggcggtgcaccactggat
ccagagctgctagcgttcttccgcggcgcaggcgtgccagtttacgagggctatggtctt
acggaaaccactgccccgtgcgcgtttactcctattggcgttccattccgtgaaggctct
gttggcattgctttcccagctttcactttgcgaattgctaaagatggcgaagtgcaaatt
aagggcacttgcgtgtttaagaagtatcacaagaatgaagaggcgacagaaacttcgttt
acagaagacggatggtatgctactggcgatttgggtcgcattgacgacgatggcatgctt
tacattactggtcgcaagaaggacttgattattactgccggcggcaagaatgtggctccg
ggtcctattgaagaagtgattaagcgttgcgaacttgtatctcaagctcttgttcttgga
gataaaagaccatttatatctgctcttgtgactttagacgaggagattttacgcaattgg
cttaagaccaagggcttggacgagactatgagcatggaagacgccgcaaataacgcggtt
gtgcgcgcggaaatccaaaagtttgtggatattgcaaacgaggacgtatcgcgcgcggaa
tctgtgcgaaagttcattattctgccagaagagtttactcaagaaaacggtttgatgacg
gcttctatgaagattatccgcccgcgcgttattaagaaatacgctaatctgcttaacacg
caaatgtatacgattcgcaagaagtag
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