Gardnerella vaginalis ATCC 14019: HMPREF0421_21131
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Entry
HMPREF0421_21131 CDS
T01344
Symbol
rnc
Name
(GenBank) ribonuclease III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
gvg
Gardnerella vaginalis ATCC 14019
Pathway
gvg03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
gvg00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
HMPREF0421_21131 (rnc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gvg03019
]
HMPREF0421_21131 (rnc)
03009 Ribosome biogenesis [BR:
gvg03009
]
HMPREF0421_21131 (rnc)
03036 Chromosome and associated proteins [BR:
gvg03036
]
HMPREF0421_21131 (rnc)
Enzymes [BR:
gvg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
HMPREF0421_21131 (rnc)
Messenger RNA biogenesis [BR:
gvg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HMPREF0421_21131 (rnc)
Ribosome biogenesis [BR:
gvg03009
]
Eukaryotic type
90S particles
RNase
HMPREF0421_21131 (rnc)
Prokaryotic type
rRNA processing factors
HMPREF0421_21131 (rnc)
Chromosome and associated proteins [BR:
gvg03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
HMPREF0421_21131 (rnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
DSRM_2
Motif
Other DBs
NCBI-ProteinID:
ADP39213
UniProt:
E3D743
LinkDB
All DBs
Position
complement(1354301..1355197)
Genome browser
AA seq
298 aa
AA seq
DB search
MRYNVENMSGNNTKDQHDIQDDVKNDVQNRNYQNPNHPENARTSSIGVTRSKDGHTHDGD
PTQELLRALGTTISPDLLVEALTHRSFSHEHPGTKNYERLEFLGDAVLELVSTETLFSAH
PDMTEGQLAKLRAKAVSEWALSAVARDKLHVGPYILLGHGEMEHGGAQKDSILCDIVEAL
IGATFVEHGIDEARAVVHRLIDDTLAEVLTEGPALDWKTSLTVLAHEMGLDEPQYRMSVS
GPDYAPVFHARAVLAHESGDELLGEADGSSKRKAQLAAADKAWHVLDRRRKSSGESGN
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgcgctataatgttgaaaatatgagtgggaacaatacaaaagatcagcatgacattcaa
gatgatgtaaaaaatgacgttcaaaatcgcaattatcagaacccaaatcatccagaaaat
gctagaactagcagcataggtgttacgcgttctaaagacggacatactcatgatggtgac
cctactcaggagcttttacgcgcgctcggtactacgatttcgccagatttacttgttgag
gcgctcactcatcgctcgttttcgcacgagcatccaggcactaaaaactacgagcgtcta
gagtttttgggagacgctgttttggagcttgtttctacagaaacgctgttttctgctcac
ccagatatgacggaaggtcagttggctaagcttcgcgctaaggctgtttcggagtgggct
ttgagcgcggttgcgcgagataagttgcacgttggaccgtatattcttttgggtcatggc
gagatggagcatggcggcgctcaaaaagactcgattttgtgcgatattgttgaggcgctt
attggcgcgacttttgttgagcatggcattgacgaggcgcgcgctgtagtgcatcgtttg
attgacgacactttggcggaggttcttacagaaggtcctgctctggattggaagacttcg
cttacggttttggcgcacgagatggggcttgacgagccgcaatataggatgtcggtttct
ggcccagattatgcgcccgtgttccatgcgcgcgcggttttggcacacgaaagcggcgac
gagctgttgggtgaggcggatggctctagcaagcgcaaggctcagcttgctgctgcagat
aaagcttggcacgtgttggatagaaggcgtaagtctagcggagaaagcggtaattag
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