Gardnerella vaginalis ATCC 14019: HMPREF0421_21258
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Entry
HMPREF0421_21258 CDS
T01344
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
gvg
Gardnerella vaginalis ATCC 14019
Pathway
gvg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gvg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMPREF0421_21258 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gvg03021
]
HMPREF0421_21258 (rpoA)
03400 DNA repair and recombination proteins [BR:
gvg03400
]
HMPREF0421_21258 (rpoA)
Enzymes [BR:
gvg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMPREF0421_21258 (rpoA)
Transcription machinery [BR:
gvg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMPREF0421_21258 (rpoA)
DNA repair and recombination proteins [BR:
gvg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMPREF0421_21258 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
ADP39340
UniProt:
E3D7W3
LinkDB
All DBs
Position
complement(1560376..1561371)
Genome browser
AA seq
331 aa
AA seq
DB search
MLIAQRPTLTEESLNPQRSRFTIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSVRISGAL
HEFTTLPGVEEDVTEILLNIKGIVLTSEYDEPVVMYLRKSGKGEATAGDITPPAGVTIAN
PEMHIATLAEDGELEIEFTVERGRGYVPAQMNKQENSEIGRIPVDSIYSPVLKVSYKVEA
TRVEQRTDFDKLILDVETKPAITPRDAVASAGSTLVELFGLCRELNVDAEGVEVGPAPVM
GEVDSQMATPIEDLNLTQRSYNCLKREGIHTVGELVVHTEQDLLDIRNFGMKSIDEVKEK
LQSMGLSLKASPLGFDANNLEGGTFFSPEDE
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
gtgcttatcgcacagcgtccaacacttaccgaggaatcactgaatccccagcgttctcgc
tttacaattgagccgttggaaccaggtttcggatacacgctcggcaattcgctgcgtcgt
accctattgagctccattccaggtgctgccgtaacttcggtacgcatttctggtgctctc
catgagttcacgactctgccaggtgttgaagaggatgtcactgaaatcctgctgaacatt
aagggtatcgtacttacaagtgagtatgacgagccagtagtgatgtatcttcgcaagagc
ggcaagggtgaagcaacagctggagatattactcctcctgctggcgtcactattgccaat
ccagagatgcatatcgctacacttgctgaagatggtgagcttgaaattgagttcaccgtg
gagcgcggtcgtggatatgtacctgctcagatgaacaagcaggaaaacagcgaaatcggt
cgcattccagtggattcgatctactcaccagttttgaaggtgagctataaggtcgaagct
acccgcgtggaacagcgcacggacttcgataagctcatcctggatgtggaaactaagcca
gctattacaccacgagatgcagttgcatctgctggttcgactttggttgagctttttggt
ctttgccgtgagcttaacgtcgatgcagaaggtgttgaagttggtccagctccagtcatg
ggagaagttgattctcagatggctactccgattgaggatttgaatcttacgcagcgcagc
tacaactgcttgaagcgtgagggaatccacactgttggtgagctggtagtacacactgag
caggatttgctcgatattcgtaatttcggcatgaaatccatcgatgaggttaaagagaaa
ttgcagtctatgggattgtctcttaaggcctcgccgcttggctttgacgccaataatctc
gaaggtggcacgttcttctcgccagaagacgagtaa
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