Gardnerella vaginalis HMP9231: HMPREF9231_0007
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Entry
HMPREF9231_0007 CDS
T01939
Symbol
gyrA
Name
(GenBank) DNA gyrase, A subunit
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
gvh
Gardnerella vaginalis HMP9231
Brite
KEGG Orthology (KO) [BR:
gvh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gvh03032
]
HMPREF9231_0007 (gyrA)
03400 DNA repair and recombination proteins [BR:
gvh03400
]
HMPREF9231_0007 (gyrA)
Enzymes [BR:
gvh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
HMPREF9231_0007 (gyrA)
DNA replication proteins [BR:
gvh03032
]
Prokaryotic type
DNA Topoisomerases
HMPREF9231_0007 (gyrA)
DNA repair and recombination proteins [BR:
gvh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HMPREF9231_0007 (gyrA)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
Motif
Other DBs
NCBI-ProteinID:
AEF30925
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Position
7347..9986
Genome browser
AA seq
879 aa
AA seq
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MVDEINAANDGEYRDQLPDGSMEPQSPQESDNTDYGLMKGARVKHMDLQQEMRESYLAYA
LSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKCSRVVGDVMGKYHPHGDSAI
YDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRMAPLAMEMVRDIDKDTVDF
LPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNMREVADGVHWALDHPDASN
SELLEALIQRIKGPDFPTGATILGHKGIEQAYRTGRGLITMRAVVNTEEIKGRMCLVVTE
LPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQRLVLVLKRDAVPKVVLNNLYK
HSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVSHQLEVIDRRTRYLKREAEERDHILQG
YLKALDMIDEVVALIRSSKDVDSARTGLMNLLDVDDVQADAILAMQLRRLAALERQKILD
EHEELMRKIEDYNDILASPERQRKIVGDELDEIVAKYGDERRTKILPFSGEMNVEDLIAE
ENVVVTVTRAGYIKRTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNR
GRVYRIKAYELPEGSRDSKGQHVANLLQFTPGETIQAVLSIPNYDVAKYLVLATRSGKVK
KTALQEYDSPRQGGLIAVRLMTNEETGEPADELIGAALCNSEDDIILVSKLGMSLKFRAD
DEQLRPMGRQTAGVQGMRFREGDELLDMDVVSVETSKDLLVVTNEGFAKRTAIEEYRLQG
RNGYGVKAVQLAEGRGSLVGALIVEETDQVMAIMKSGKVIRSDVNEVKRTGRTTQGVTLA
KPDKGDEIISIARNEERDDESENKNEEVEENTSRRNLDE
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
gtggtagacgaaataaacgccgctaatgatggtgaatatagagatcagttgcctgatggg
tctatggaaccacaaagtccgcaagaatcagataatactgattacggcttaatgaaaggt
gctcgcgtaaagcacatggatttgcagcaggaaatgcgcgaatcatatcttgcttatgca
ctttctgttattgttgagcgcgctttaccagatgttcgagatggcttaaaaccagtgcat
cgtcgtgttatttacgctatgtatgatggcggctataggccagatagagggtacaacaag
tgctctcgcgttgttggcgacgttatgggtaagtatcatcctcatggtgattctgctatc
tatgacactttggttcgtatggctcaatcttggtcaatgagatacatgcttgttgatggt
caaggaaactttggttccccaggtgatgatcctgcagcagcaatgcgttatacggaatgc
cgtatggcgcctcttgctatggaaatggttcgagatattgacaaagatactgttgatttc
ttgccaaactacgatggtaaaactcaagaaccaacagttttgccagctcgtttcccgaat
cttttagttaatggttctgctggtattgctgttggtatggcaacaaatattccgcctcat
aatatgcgtgaggttgcagatggcgtacattgggctttggaccacccagatgctagcaat
tccgaacttctagaagctttaattcagagaattaaaggacctgatttccctactggagca
actatcttaggtcacaagggaattgagcaagcttaccgtacaggccgcggattaattaca
atgcgagcagtagttaataccgaggaaattaagggacgtatgtgcttggttgtcaccgag
cttccataccaagttaatcctgatcgcttagctgcttctattagggaagctgtgcgagat
ggaaagattcaaggcattgcagatatgcgcgatgaaacgtctggccgtactggtcagcgt
ttagtgcttgttcttaaaagagatgctgttccaaaagttgttttgaacaacttgtataag
cattcgcagcttcagcaaactttcggcgctaacatgcttgctttggttgatggtgtgccg
cgcactttgagtttagacgcgtttattcgtcattgggtaagtcatcagcttgaagttatt
gataggcgtacacgctacttaaagcgtgaggcagaagagcgagatcatattttgcaaggc
tatttgaaagctttggatatgatcgatgaagttgtggctttaatcagatcttctaaagat
gttgattctgctcgtactggtttgatgaatttgcttgatgttgatgatgttcaagcagat
gctattcttgcaatgcaacttcgtagacttgcagctttggaacgtcaaaagattcttgac
gagcatgaagaattaatgcgcaagattgaagattacaacgatattcttgcaagcccagag
cgccagcgcaaaattgttggcgatgagcttgatgaaattgttgctaagtatggtgatgag
cgcagaactaagattcttccattctcgggagaaatgaatgttgaagatcttattgccgaa
gaaaacgttgttgttacagtaactcgtgcaggctatattaagcgcacaaaagcagacgag
tatcgtgctcagcaccgcggaggcaaaggcattaagggtgcaaagcttcgtgaagatgat
gttgtagatcacttcttcctaacatctactcacaattggttgttgttctttactaatcgc
ggacgcgtttatcgcattaaagcatatgagcttccagaaggatcaagagattctaaagga
cagcatgttgctaatttgcttcaatttactcctggagaaacaattcaagcagtgttatca
attccaaattatgatgtagcgaagtatttggttttggcaactcgttctggaaaagttaag
aaaactgctttacaagaatatgattctccacgtcaaggtggtttgattgctgttcgacta
atgactaatgaagaaacaggcgaacctgctgatgagcttattggtgcagctttgtgcaat
tcagaagatgacattattcttgtttctaagcttggaatgagcttgaagtttagagcagat
gatgagcaacttcgaccaatgggccgccaaactgcaggcgttcaaggcatgcgatttaga
gaaggcgacgaattacttgatatggatgttgtatctgtagaaacaagtaaagatcttctc
gttgttactaatgaaggttttgctaagagaaccgctattgaagagtatcgtttgcaagga
agaaacggatatggtgttaaagctgttcaacttgcagaaggtcgcggttctttggttggt
gccttgatcgttgaagaaacagatcaagtaatggcaattatgaagtctggtaaggtaatt
cgctctgatgttaacgaagttaagcgcactggtagaacaactcagggtgtgactttagct
aagccagataagggtgacgaaatcatctctatagctcgtaatgaggaaagagatgatgaa
agtgaaaataagaatgaagaagtagaagaaaatactagcagaaggaacttagatgagtga
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