KEGG   Gardnerella vaginalis HMP9231: HMPREF9231_0165
Entry
HMPREF9231_0165   CDS       T01939                                 
Symbol
hsdR
Name
(GenBank) type I site-specific deoxyribonuclease, HsdR family
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
gvh  Gardnerella vaginalis HMP9231
Brite
KEGG Orthology (KO) [BR:gvh00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:gvh02048]
    HMPREF9231_0165 (hsdR)
Enzymes [BR:gvh01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     HMPREF9231_0165 (hsdR)
Prokaryotic defense system [BR:gvh02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   HMPREF9231_0165 (hsdR)
SSDB
Motif
Pfam: EcoR124_C T1R_D3-like SWI2_SNF2 HSDR_N ResIII DEAD Rep-A_N
Other DBs
NCBI-ProteinID: AEF30951
LinkDB
Position
185741..189040
AA seq 1099 aa
MKIVLENQDSTVMSTFTPSERNDGSYQSEAQLEEEFINILQSQGYEYAHIHNEKDLIANL
RVQIEKLNDYHFSDGEWERFFKENIANSTDDIVKKTDTIQRDNVKILKKDDGVDKNITII
DKENIHKNIVQVINQYAVNANDNASDNDANGPARSNRYDVTVLVNGLPMVHIELKRRGVP
IREAFNQINRYARDSFWAGSGLFGYVQIFVISNGTETKYYSNSTRNNAYNEQKSKGSSKT
TTSNSFEFTNYWSDAQNTIISDLCDFAKTFFAKHVILNILTKYCVFNADKCLMVMRPYQI
TAAENIVNRVKYMFANVSKMPSSERQKGGYVWHTTGSGKTLTSFKTSQLVKALKDVEGKN
LVDKVLFVVDRKDLDYQTMREYDTFEKGAANSNTSTAVLTKQLEDNTEECRLIITTIQKL
SRFISNNPSHEIYKKRIVFIFDECHRSQFGGMHADIVKHFKNALLFGFTGTPIFEANAAG
SDAAHISTTEQTFGPCLHTYTIINAINDKNVLPFRVEYVATVKTSSELEKATDELVKDIN
RPEVIKHKDRVHNVVQYIIEHFTQKTYRNEKTYKYKRIINVKELAADKHNTLETKKSSES
VDVNGFNSIFAVADIPLAKAYYNEFKKQQQNLPPSERLKVATIFSYAVNEGESDSSAYAN
GMGSLGEENSESTAKLDANSQEFLESAIKDYNEMFNTAYDASNNKFQNYYKDVSIRMKNK
EIDVLIVVNMFLTGFDATTLNTLWVDKNLRMHGLIQAFSRTNRILNSVKTFGNIVCFRDL
SYRVDEAVSLFGDKDAQGIVLCPTFEQIYNGYVDAKGIERCGYSDLVNELMEKYPLQGFD
IVGEENQKKFISLFGNILRLRNLLKAFDQFEGNEIIKERDMQDYLGHYQDLHEEWKRKEQ
KGDIANITDDVVFEMELVRQVEVNIDYILMLVERYHSKHCKDKNVLASIRVAVDSSPQLR
SKKKLIEGFIAQLNEKELGKLVDSEGNITVYDSNGNKLSIVDCWSEYVEQKYDHDLEQLV
QSEGLNDALTRKFMEKSFSAGEVSELGTDINDLMPRMSRFGAAAIVRAEKKSRIVESMRN
MFNEFVGLIGFSQYDSQKD
NT seq 3300 nt   +upstreamnt  +downstreamnt
atgaaaatcgtgttagagaatcaagatagcactgtaatgtctacgtttacgccgagtgag
cgaaacgacggcagctatcaaagcgaagcacaactcgaagaagagttcatcaatattttg
caatcccaaggctacgagtatgctcacattcacaacgagaaagatcttatagcaaatctt
cgagtgcaaatcgaaaagctcaacgactaccatttttcagatggcgagtgggaaagattt
ttcaaagaaaatattgcaaacagcactgacgatatagttaagaaaacagatactattcag
cgagataacgttaaaatactcaaaaaagatgacggcgtagataagaacattactattatt
gacaaagaaaatattcacaagaatattgtgcaagtaatcaaccagtatgctgttaacgca
aacgataacgcaagcgataatgatgcaaatggtcctgcgcgtagcaatcgttacgatgtg
actgttctagtaaacggcttgccgatggttcacattgagctaaagcgcagaggtgtgcct
attcgagaagcgttcaatcagattaaccgttatgctcgtgactcattttgggctggaagc
ggactatttggatacgtgcaaattttcgtaatctcaaacggcactgaaacaaagtattac
tctaactcaactcgcaataatgcttacaacgagcagaaaagtaaaggatctagcaaaaca
acaacaagtaacagttttgaatttacaaactattggtccgatgctcaaaacactataatc
tccgacttatgcgattttgctaaaaccttctttgcaaagcacgtaattcttaacattctt
acaaaatattgcgtttttaatgcagataaatgcttgatggttatgcgaccataccagatt
actgcagcagaaaacatagtgaatcgcgtaaaatacatgtttgctaatgtaagcaaaatg
ccatcatcagagcgtcaaaagggtggttatgtttggcatactactggatcgggtaaaacg
ctaactagcttcaaaacatcgcagttagtaaaagctttgaaagacgtagaaggcaagaat
cttgttgacaaagttttgtttgttgtagaccgtaaagatcttgactatcaaacaatgaga
gaatatgacacgtttgaaaaaggagccgcaaatagtaacacttcaacagctgtgcttaca
aaacagctagaagacaatacggaagaatgcaggcttattataaccactattcaaaagctt
agtagatttataagcaacaacccaagtcatgaaatttacaaaaagcgcatagtgtttatt
tttgacgaatgccaccgaagccaatttggaggcatgcacgcggatattgtaaaacacttt
aaaaatgctctgctttttgggtttactggcacgccaatttttgaagcgaacgctgctgga
tccgacgctgcgcatatttctacaaccgagcaaacctttggaccgtgcttgcacacgtac
acaatcattaacgcgattaacgataaaaatgtgttgccattccgcgtggaatacgttgct
actgtaaaaacgtctagcgagctggaaaaagcaaccgacgaattggttaaagatattaat
cgccctgaggtaattaagcacaaagatcgcgtgcataatgttgttcaatatattattgaa
cattttactcaaaaaacgtatcgcaacgagaaaacttacaagtacaagcgcattattaac
gttaaagaacttgctgcagataagcataatactttagagactaaaaaatcttctgaatca
gttgacgtaaacggctttaattcaatctttgctgttgcagacattcctcttgcaaaagcg
tattacaacgagttcaaaaagcagcagcaaaatctgcctccaagcgaacgcttaaaagta
gcaactattttcagctatgcagtaaacgagggcgagtcagattcttcggcgtacgccaac
ggcatgggttctcttggagaagaaaattccgaaagtactgcaaagctagacgcaaattcg
caagaattcttggaaagcgcaataaaagactataacgaaatgtttaatactgcgtatgat
gcgtcaaataacaaattccaaaactattacaaagacgtttcaattcgcatgaaaaataag
gaaattgacgttttgattgtagtcaacatgtttctaactggttttgatgcaacaactttg
aacacgctttgggtagataaaaatcttcgcatgcatgggcttattcaagcgttttcgcgc
acaaatcgaatcttaaattccgttaaaacattcggaaacattgtgtgctttagggatttg
agttatagagttgacgaagcggtaagtctttttggagataaagatgcgcaaggtattgtg
ctttgtcctacgtttgagcagatttacaacggttacgttgacgctaaaggaattgagcgt
tgcggatacagtgatttagtaaatgagcttatggaaaagtatccgctgcaaggcttcgac
attgttggagaagagaatcagaaaaagtttatatcgctttttggtaatattctgcgcttg
cgtaacctgctgaaagctttcgatcaatttgaaggcaacgagataatcaaagagcgcgat
atgcaagattacttggggcattaccaggatttgcatgaagagtggaagcgcaaagagcaa
aaaggcgatattgcaaacattacggacgatgttgtgtttgagatggagcttgtgcggcaa
gtagaagtaaatattgactacattttgatgttagtagaacgttaccatagcaagcattgt
aaggataaaaatgttcttgcttctattagggtggcagttgactctagcccgcagttgcgt
agtaaaaagaagcttattgaagggtttattgcgcagcttaacgagaaggagcttgggaag
cttgtggattctgaaggtaacattactgtttacgattctaacggcaataagttgagtatt
gttgattgctggagcgagtatgttgagcaaaagtatgatcatgacttggaacaacttgtg
caaagtgaaggattaaacgatgctttgactcgcaagtttatggagaaatcttttagcgct
ggcgaagtaagtgagcttggtacagacattaatgatttaatgcctagaatgagcagattt
ggcgctgcggcgattgtgcgcgctgagaagaaaagtcgcattgtagaaagtatgagaaac
atgtttaatgagtttgttgggcttattggtttttctcaatacgattcgcaaaaagattga

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