Gardnerella vaginalis HMP9231: HMPREF9231_0331
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Entry
HMPREF9231_0331 CDS
T01939
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gvh
Gardnerella vaginalis HMP9231
Pathway
gvh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gvh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMPREF9231_0331 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gvh03021
]
HMPREF9231_0331 (rpoC)
03400 DNA repair and recombination proteins [BR:
gvh03400
]
HMPREF9231_0331 (rpoC)
Enzymes [BR:
gvh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMPREF9231_0331 (rpoC)
Transcription machinery [BR:
gvh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMPREF9231_0331 (rpoC)
DNA repair and recombination proteins [BR:
gvh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMPREF9231_0331 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Ac81
Motif
Other DBs
NCBI-ProteinID:
AEF31001
LinkDB
All DBs
Position
391787..395806
Genome browser
AA seq
1339 aa
AA seq
DB search
MLDVNAFDKLRIGLATADDIRSWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTRSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDI
APKDLEKVIYFAAYMVTKVDEEQRHQDLPDLQDEFDTEIGNLRKRRDNEIEARAKKVEED
LHELEESGEAKGNAKSKLRAGAEREMAAIRTRYDEQIQRLNAVFDRFKGLRAGDMEGDVD
LWREMEDRYGDYFEGCMGAEAIKKRLQDFDLKSAAVELREEIDNGTGQRKARALKRLKVV
NAFLTTGNKPEAMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIE
LGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDQGFAQNMKSAKRLVDRG
DSEVWGVLEEVISEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARSLMMASDNILKPADGHTVTMPSQDMILGLYYLSTVIDGAKGQG
RIFSSLAEAQMALDKHEIDMQAKVLIRVPEDFVLPKDWEPGELKVVDPEPGSPDVVHEER
FKDGTVLFATSYGRVLFNGTLPEDYPFVNQQVPKGVLSKIVDDIATRYSTAQVAASLDAL
KDLGFTRAPWSGVTMAFSDIVLPSNREAIAQDYENQAAKINSQYDMGLLTDEERRQELIN
LWTECTDKVADAMRENFHDDNNVNIMVQSGARGNWMQIRQIAGMRGLVANPKGEIIPRPV
KSNYRDGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQEVIVREEDCGTKRG
LMMKIADRDENGNLTLVKAADGGPYSRLLAADVLDPADGTTVLAKCGDALSMDVLRDLVA
HGVEEVKARSVLTCESKRGVCAKCYGWSLATSSLVDVGEAVGIVAAQSIGEPGTQLTLRS
FHSGGVASASDITQGLPRVTELFEARTPKGEAPIAEFPGVVKVEDTDHGRQVTLTPDDTT
VEPIVYPVTRRAPMLVKDGDHVEVGTQLIEGSVDPKKILRILGPRAAQVNIVEEVHNVYR
SQGVDIHDKHIEVIVHQMLRRITVIDSGDTNLLPGELVDQAKFREANLEAVKNGGKPAAG
RPELMGITKASLATDSWLSAASFQETTRVLTEAALSQKEDDLKGLKENVIIGKLIPAGTG
LARYRNADVFADPEVRDAVYPNLGLGGADGTPSNFGESNMGDVDFSNIDFGDMQLGDEFN
PDDFLDDQGGQGDYDDDLN
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacgcatttgacaaactgaggattggactggcaaccgccgacgacatc
cgtagctggagccacggcgaggttaagaagccagaaaccattaattaccgtacccttaaa
ccagagaaggatggtctgttcggtgagcagattttcggtcctactcgcgactgggagtgc
gcgtgcggcaagtataagcgcgtgcgctttaagggaatcgtgtgcgagcgatgcggcgtg
gaagttacacgcagccgcgttcgccgtgaacgcatgggtcatattgagcttgcggctcct
gtaacacacatttggttcttcaagggtgtgccaagccgcttgggttacctgcttgatatt
gctccaaaagacttggaaaaggttatttactttgcagcctacatggttactaaggtagat
gaagagcagcgtcaccaagatcttccagacttgcaagacgagttcgatacggaaatcggc
aatcttcgtaagcgccgcgacaatgagattgaagctcgcgcaaagaaggtagaagaagac
ctgcacgagctggaagaatcaggcgaagcaaaaggcaacgcaaagtctaaattgcgcgct
ggagcagagcgagaaatggctgctattcgtactcgctacgatgagcagattcagcgtttg
aacgcagttttcgatcgctttaagggcttacgcgcaggagatatggaaggcgatgttgac
ctttggcgagaaatggaagaccgctacggtgactattttgaaggctgcatgggtgctgaa
gcaatcaagaagcgcttgcaggacttcgaccttaagtctgctgccgtagaacttcgcgaa
gaaatcgacaatggtactggtcagcgcaaggcgcgcgctttgaagcgacttaaagttgta
aacgcgttcttgactactggaaacaagccagaagcaatggttttggacgttattccagta
atcccaccagatttgcgaccaatggttcagcttgatggtggacgctttgcaacatccgat
ttgaacgacttgtaccgtcgagtaatcaaccgtaacaatcgtttgaagaggttgattgaa
cttggtgctcctgaaatcatgcttaataacgaaaagcgcatgcttcaggaagcagttgat
tcactcttcgacaacggtcgtcgtggtcgcccagtaactggtgcatcgaaccgtccacta
aagtcgctttccgatatgcttaaaggtaagcagggtcgattccgccagaacttgctcggt
aagcgagttgattattctggccgttccgtaatcgttgttggtccaagcctccgcatgcat
caatgcggtttgcctaagccaatggcgttggagctgtttaagccattcgttattaagcgt
ttggtggatcagggctttgctcagaatatgaagagcgcaaagcgccttgtagatcgcgga
gattccgaggtttggggtgtgcttgaggaagttatttctgaacatcctgtgcttcttaac
cgtgctcctacacttcaccgtttgggtattcaggcatttgagccaattttggttgaaggt
aaagcaattcaccttccaccacttgcttgcgccgcattcaacgctgacttcgatggtgac
cagatggcagtgcatttgccactttccgccgaagctcaggcagaagctcgcagcttgatg
atggcatccgacaatatcttgaagccagcagatggtcacactgttaccatgccatctcag
gatatgattttgggcttgtactacttgtctacagtaatagacggtgcaaagggtcaaggc
agaatcttctcttcgcttgcagaggctcaaatggcactcgacaagcatgagattgacatg
caggcaaaggtattaatccgcgtgccagaggactttgtgctaccaaaggattgggagcca
ggagaacttaaggtcgtagatccagagccaggcagcccagatgttgttcatgaagagcgc
tttaaggatggaactgtattgttcgccacatcctacggtcgcgtgttgtttaacggcact
cttccagaggactatccgtttgtgaaccagcaggttccaaagggtgttctctccaagatt
gttgacgatattgctacacgttattccactgctcaggtagccgcatcccttgatgctttg
aaggatcttggctttactcgagcaccttggtctggcgttacaatggcattctctgatatt
gtgcttccttcaaatcgtgaggctattgcacaagactacgagaatcaggctgcaaagatt
aactcccagtacgatatgggtcttcttacagatgaagagcgtcgtcaagagttgattaac
ttgtggactgaatgcaccgataaggttgcagatgctatgcgcgagaacttccatgatgat
aacaacgtgaacatcatggttcagtctggtgcacgcggtaactggatgcagattcgtcag
attgctggtatgcgaggcttagtggcaaaccctaagggtgagattattcctcgtcctgtt
aagtcaaactaccgtgatggtctttctgtgttggagtacttcatctcccagcacggtgcg
cgtaagggcttggctgataccgcacttcgtactgcagaatctggttacttgactcgtcgt
cttgtggacgtttctcaggaagttattgttcgtgaggaagattgcggcacaaagcgtggt
cttatgatgaagattgcggaccgcgacgaaaatggcaatttgacgcttgttaaggctgct
gatggtggtccatactcgcgcttgcttgctgcagatgttctcgatccagcagatggtaca
accgttttggctaagtgtggtgacgcgctttcgatggatgttttgcgtgacttggttgcg
catggtgtcgaagaagttaaggctcgttctgtgcttacttgcgagtctaagcgtggcgtt
tgcgcaaagtgctacggttggtctttggctacaagctctcttgttgatgttggcgaggct
gttggtattgttgcagcacagtccattggtgagcctggtacgcagcttacgcttcgttcc
ttccactctggtggtgttgcttcggcaagcgatattacgcagggtcttcctcgtgttacc
gagcttttcgaggctcgtacacctaagggcgaggctccaattgctgagttcccaggtgtt
gtgaaggttgaggatactgaccatggtcgtcaggtgactttgactccagacgatactacg
gttgagccaatcgtttacccagtaactcgtcgtgctccaatgcttgttaaggatggagac
cacgttgaggttggtacgcagctgattgaaggttctgtggatcctaagaagattctgcga
attcttggtcctcgtgctgctcaggtgaacattgtggaagaagtgcacaacgtgtaccgt
tctcagggcgttgatattcacgataagcatattgaggttattgttcaccagatgcttcgc
cgcattacggtgattgattctggagacacgaaccttcttccaggcgaacttgtggatcag
gctaagttccgtgaagcaaatcttgaggctgttaagaatggtggtaaacctgctgctggt
cgtccagagcttatgggtattacaaaggcttctttggctacagattcttggctttctgcc
gcatccttccaggagactacacgcgtgcttactgaagctgctttgagccagaaggaagat
gatcttaagggcttgaaggagaacgttattattggtaagctcatcccagctggtactggt
ttggcgcgttatcgtaatgcggatgtctttgcagatcctgaggtgcgtgatgctgtttat
ccaaaccttggtttgggtggagcagatggcactccgtcaaactttggagagagcaacatg
ggagatgttgatttctcgaacattgattttggcgacatgcagcttggggatgagtttaat
ccagatgacttccttgatgatcagggtggtcagggtgattatgatgatgaccttaactaa
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