Gardnerella vaginalis HMP9231: HMPREF9231_0347
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Entry
HMPREF9231_0347 CDS
T01939
Name
(GenBank) hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gvh
Gardnerella vaginalis HMP9231
Pathway
gvh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gvh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF9231_0347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gvh03019
]
HMPREF9231_0347
Messenger RNA biogenesis [BR:
gvh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HMPREF9231_0347
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AEF31853
LinkDB
All DBs
Position
434398..436362
Genome browser
AA seq
654 aa
AA seq
DB search
MQLTDEILAEIVDSVKTSQPSKITNKKSNKTVKKEKTTNTSKKSNKTSDNKINDNNIESL
KASKKIKNTQSSKSSKIVKNALPPVVNDQRDGALIAPPKYRKGSMRIVPLGGLGEIGRNM
NVIEYNGHILLIDCGVLFPEEEQPGVDLILPDFHYIQNRLDKVDALVLTHGHEDHIGGVP
YLLKMRPDIPLIGSKLTLAFVEAKCAEHRINPKMIHVEGRDKLKIGPFNLEFISVTHSIP
DALAVCVKTPAGTLIDTGDIKLDQLPLDHRLTDLVEFGKLGEQGIDLLMADSTNAEVPGF
VKPETTIGPALDRAFAEATRKIIVASFSSHVHRVQQVVDAAHKYGRKVVFVGRSMVRNMS
IAADLGYLHIPENTVVDLKQAKDIQDDKLVYMCTGSQGEPMAALGRIADGIHKDITVNEL
DTVILASSLIPGNEHEVYKVINKLVQMGARVINKDNAAIHVSGHCNEGELLYLYNIVKPK
CAMPIHGEHRHLVANGSIAVKTGVDPKNVVLAEDGDVVDLYHGNAAVVGSVPCGYVYVDG
DSVGELTDEELEKRRILGTEGFVSSFIVVNTDSADVVAGPKIYLNAVAEDESDFEKVRSQ
IVFQLQDAMMHGEKDTYKLQQIMRRTLGSWIARALRRKPMIVPVVANISENNQE
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgcaattgacggatgagattcttgcagaaattgtagactctgtaaaaacctcccaacct
tcaaaaataacgaataaaaagtcaaataaaactgtgaaaaaagaaaaaacaactaataca
agtaaaaaaagcaataaaacaagcgataacaagattaacgataacaatatcgaatctttg
aaagcaagcaaaaaaatcaaaaatacgcaaagttctaaaagttctaaaatagttaaaaac
gcgcttccaccagtggtaaacgatcagcgcgatggtgcgttaatcgctccgccaaaatat
cgcaaggggtcaatgagaattgttccgcttggcggattgggcgaaatcggaagaaatatg
aacgttatagaatacaacggtcatatcttacttatagactgcggagtgcttttcccagaa
gaagagcagccaggcgtagacctgattttgccagattttcactacattcaaaacaggtta
gataaagtagatgctctggtacttacgcacggacatgaagaccatattggtggcgtgcca
tatttgctaaaaatgcgtccagacattcctctaatcggatctaaattaacactcgctttt
gttgaagcaaaatgtgcagaacacagaatcaacccaaaaatgattcatgtagaaggcaga
gacaagctaaaaataggtccttttaatttggagtttattagcgtaacacactccattcca
gacgctcttgcagtgtgtgtaaaaacgccagcaggaacgcttattgatacgggagatata
aagctagatcagcttccactagaccataggcttactgatttagttgaattcggaaagctt
ggcgaacagggaattgacttattaatggcggattccacaaatgccgaggttccaggattc
gttaagccagaaaccactattggaccagctttggatcgtgcatttgcggaagccactcgc
aaaataatcgtcgcaagcttctctagccatgttcaccgcgttcagcaagtcgtagacgct
gcacacaagtatggtcgaaaagttgtgttcgttgggcgctcaatggttagaaatatgtct
attgcggcagatctcggctacttgcatattccagaaaatactgttgtagatttaaagcaa
gcaaaagatattcaagacgacaagcttgtgtatatgtgcacaggatctcaaggcgaacca
atggcagctcttgggcgaatcgcagacggaatacacaaagatattacagttaatgagctt
gataccgtaattcttgcaagctcactaatcccaggaaacgagcatgaagtttacaaagta
atcaacaagcttgtgcaaatgggcgctcgcgtaatcaacaaagataatgctgcgattcat
gtttctggtcattgcaatgagggtgagttgctctacttgtacaacattgttaagccaaaa
tgcgctatgccaattcacggcgaacacaggcatcttgtggcaaacggttcgattgctgtt
aaaacaggcgtggatcctaaaaatgttgttttggcagaagatggagatgttgtggacttg
taccacggaaacgccgccgttgttggatctgtgccatgcggatacgtgtatgttgatggc
gattccgttggcgagcttacagacgaagagctggaaaagcgtagaatccttggcacagaa
ggatttgtgtctagctttatagtggtaaatacagatagcgcagatgttgtagcaggtcca
aagatttacttgaatgctgttgcagaagacgagtctgattttgaaaaagttcgatctcaa
attgttttccagcttcaagatgccatgatgcacggcgagaaagacacgtataagcttcag
cagattatgcgaagaacgcttggaagttggattgcgcgtgcgttgcgtaggaagccaatg
attgtgccagtagtagcaaatatttcagaaaataatcaagaataa
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