Gardnerella vaginalis HMP9231: HMPREF9231_0355
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Entry
HMPREF9231_0355 CDS
T01939
Name
(GenBank) exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
gvh
Gardnerella vaginalis HMP9231
Pathway
gvh03030
DNA replication
gvh03430
Mismatch repair
gvh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gvh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMPREF9231_0355
03430 Mismatch repair
HMPREF9231_0355
03440 Homologous recombination
HMPREF9231_0355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gvh03032
]
HMPREF9231_0355
03400 DNA repair and recombination proteins [BR:
gvh03400
]
HMPREF9231_0355
Enzymes [BR:
gvh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HMPREF9231_0355
DNA replication proteins [BR:
gvh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HMPREF9231_0355
DNA repair and recombination proteins [BR:
gvh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HMPREF9231_0355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AEF31856
LinkDB
All DBs
Position
complement(446700..447470)
Genome browser
AA seq
256 aa
AA seq
DB search
MPNNINELMEALNETQQQSEKTPLSQSFLLGFDTETTGAILGEDSICSATLVLRNPQNKT
HNDVIATWLINPHKPINPKASQVNGFTDEFLQENGGEPTAEIEALAAAVSLAQSKNIPLL
AYNAPFDVEMLRHDLKKWDLTSLNNRPNSTINDGEILVVDPLVIDRAVSKRTGKRTLTHT
TQFYGVEPIGDFHDATADTVAAVDLIKPISELHEDVANLELCDLMTWQRKAYTKWKNSFD
EWLKSKGKPASSGNWL
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
atgccaaacaacattaacgagcttatggaagcgctaaacgagacacagcagcaaagcgaa
aaaacgccactcagccaatccttcctgctcggtttcgacacagaaacaacgggcgcaatt
ctcggtgaagactccatttgttcagcaactcttgtgctcagaaacccacaaaataagact
cacaatgacgtgatagcaacctggttaataaacccgcacaagccaattaatccaaaagca
agccaagtcaacggatttacggacgagttcctacaagaaaacggtggggaaccaacggcg
gaaatcgaagcattggctgcggcggtaagcctcgcgcagagcaaaaatattccactgctt
gcatacaacgctcctttcgacgttgaaatgctaaggcatgatttaaaaaaatgggattta
acaagcctgaacaatcgcccgaatagcacaatcaacgatggagaaattcttgtagtagac
ccattagttatagaccgcgctgtttctaagcgcacaggcaagcgaacacttacgcataca
acacaattctacggcgtagagccaataggagactttcacgacgcaacagcagacactgta
gccgcagtagacttgattaagcctataagcgaattacatgaagatgttgcaaatcttgaa
ttatgcgatttaatgacatggcaacgcaaagcgtatacaaagtggaaaaacagcttcgac
gagtggctaaaatccaaaggaaaaccagctagcagcggaaactggctataa
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