KEGG   Gardnerella vaginalis HMP9231: HMPREF9231_0366
Entry
HMPREF9231_0366   CDS       T01939                                 
Name
(GenBank) DNA-binding helix-turn-helix protein
  KO
K18830  HTH-type transcriptional regulator / antitoxin PezA
Organism
gvh  Gardnerella vaginalis HMP9231
Brite
KEGG Orthology (KO) [BR:gvh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:gvh03000]
    HMPREF9231_0366
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:gvh02048]
    HMPREF9231_0366
Transcription factors [BR:gvh03000]
 Prokaryotic type
  Helix-turn-helix
   Other families
    HMPREF9231_0366
Prokaryotic defense system [BR:gvh02048]
 Toxin-antitoxin system (TA system)
  Type II TA system
   PezT-PezA
    HMPREF9231_0366
SSDB
Motif
Pfam: Epsilon_antitox HTH_3 HTH_31 HTH_26 HTH_19 HTH_11 HTH_23 MqsA_antitoxin HTH_24 DUF1870 HTH_Crp_2 HTH_7 MarR_2 Xre-like-HTH Sigma70_r4 DUF7726 GntR YdaS_toxin HTH_AsnC-type HTH_25 MarR HTH_17 HTH_10 HTH_92 Crp
Other DBs
NCBI-ProteinID: AEF31721
LinkDB
Position
462658..463131
AA seq 157 aa
MVSVNIRALRRSKKITQQELAEALGVSRNSIVRYENGTSAISTRLIDKICDKFKVSLFDI
VHEKELSASDKYDLNMKIEVLKERGALLLARLYKYEDSMNIQFDDSSNAWIAISDDLSDV
INTKIYTSTNFEDINRYIGYLDGIERLLEYVSCNKNS
NT seq 474 nt   +upstreamnt  +downstreamnt
atggtttctgtgaatattcgagcactacgtcgctcaaaaaaaataactcaacaagagtta
gctgaagcattaggagtatctcgtaatagcattgtgcgatacgaaaatggtacaagtgct
atttcaactaggttaatagataagatttgtgataaattcaaggtttctctttttgatatc
gtacatgaaaaagaattatctgcatctgataaatacgatttgaatatgaagattgaagtt
ttaaaggagcgtggcgcacttttactggctcgtttatataaatacgaggatagtatgaat
atacaatttgatgattcttctaatgcatggattgcaattagtgatgatttatcagatgta
attaatacaaagatttatacatctacaaattttgaagatataaatcgttatatcggatat
ttagatggcatagaacgcttgcttgaatacgtaagttgcaataaaaatagttaa

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