Gardnerella vaginalis HMP9231: HMPREF9231_0398
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Entry
HMPREF9231_0398 CDS
T01939
Symbol
ffh
Name
(GenBank) signal recognition particle protein
KO
K03106
signal recognition particle subunit SRP54 [EC:
3.6.5.4
]
Organism
gvh
Gardnerella vaginalis HMP9231
Pathway
gvh02024
Quorum sensing
gvh03060
Protein export
gvh03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
gvh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03060 Protein export
HMPREF9231_0398 (ffh)
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
HMPREF9231_0398 (ffh)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
HMPREF9231_0398 (ffh)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
gvh02044
]
HMPREF9231_0398 (ffh)
Enzymes [BR:
gvh01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.5 Acting on GTP to facilitate cellular and subcellular movement
3.6.5.4 signal-recognition-particle GTPase
HMPREF9231_0398 (ffh)
Secretion system [BR:
gvh02044
]
Sec (secretion) system
Prokaryotic Sec-SRP core components
HMPREF9231_0398 (ffh)
Eukaryotic Sec-SRP protein
HMPREF9231_0398 (ffh)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SRP54
SRP_SPB
SRP54_N
CbiA
nSTAND3
cobW
AAA_22
AAA_31
ArsA_ATPase
AAA_24
Zeta_toxin
AAA_33
APS_kinase
ParBc
LPD22
AAA_18
MeaB
Motif
Other DBs
NCBI-ProteinID:
AEF31315
LinkDB
All DBs
Position
complement(492912..494612)
Genome browser
AA seq
566 aa
AA seq
DB search
MAAFSSLTERLSGAFKHLRRKGKLSDADIDGTIREIRRALLDADVALDVVRSFTAKIRER
ALGEEVSSALNPAQQVVRIVNDELTNVLGSGVDRPLNFAKYPPTVIMLAGLQGAGKTTLA
GKLGYWLKDSGHTPLLVAADLQRPNAVTQLEVVAERAGVAIFAPERGVQSDGGSEVVSAG
LATGDPVKVARDSIDYARAKMYDTVIIDTAGRLGVDDALMQQAREIRDAVNPQEILFVID
AMIGQDAVRTAQAFNEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGEGLKDF
EIFHPDRMASRILDMGDILTLIENAQKQFDEEESRKAAAKISEGTFGLDDFLDQLQQVKK
LGSMKKILGMMPGMAAHRQELEQFDDREIDRTEAIIRSMTPKERKDTKIIDGSRRARIAA
GAGVPVSAVNALLQRFEQAAKMMKRMSNGGGAGMPGMGGMPGFGGPGGKSKRKDKKSKKK
GGKSGNPMRREAEERALRERLSGNSSANSANDDANGESAFMKKKQDLPNNLPENLQNLMS
GEGDFADEMPDLPPNLGGGLAGLFGR
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggcagcatttagttcgttaacagaaagactttctggcgcattcaaacacttgcgcaga
aaagggaaattatccgacgcagacatcgacggcacgattcgtgaaattcgccgtgcgctt
ttagacgcagacgtagctctagatgttgtgcgatcatttaccgctaaaattcgcgagcgc
gcactaggtgaagaagtttctagcgcactgaatcctgctcagcaagttgtgcgaattgta
aacgacgagcttacaaacgttttgggttcaggcgttgatagaccgctgaattttgcaaaa
tatccaccaactgtaatcatgcttgctggtttgcaaggcgctggtaaaacaacgctcgct
ggaaagttgggctactggcttaaggattcgggtcatacgcctttgcttgttgcggcggat
ttgcaacgtcctaacgctgttacgcagcttgaggttgttgcagagcgtgcaggtgtggcg
atttttgcgccagagcgaggcgtgcaaagtgacggcggcagcgaagttgtttcggctggt
ttagccactggggaccctgttaaagttgcgcgagattctattgactacgcgcgcgcaaaa
atgtacgacacggttattatcgataccgctggtcgccttggcgtggacgatgctcttatg
cagcaggcgcgcgagattcgcgatgctgttaatccgcaagaaattctgtttgttatagac
gccatgattggtcaggacgctgttcgtacggctcaagcgtttaacgagggcgttgacttt
acgggtgttgtgctttctaagttagatggcgatgcacgaggcggcgctgcattatctgtt
gcaagcgttacgggaaagccgattttgttcgcctctactggcgaaggtttgaaggatttt
gagattttccatccagatagaatggcttcaagaatcctcgacatgggcgatattctaacg
cttattgagaatgcgcaaaaacagtttgacgaggaagagtctagaaaagctgccgctaaa
atatctgaaggaacttttggactagacgactttttggatcagcttcagcaggttaaaaag
cttggttctatgaagaagattcttggtatgatgcctggaatggcagcgcacagacaggaa
cttgagcagtttgatgaccgcgagatagaccgcacggaagctattattcgttcgatgacg
cctaaagagcgcaaagacaccaagattattgatggttctaggcgcgcgcgcattgcagct
ggcgcaggcgttccagtttctgcagtgaatgcgcttttgcaacgctttgagcaagcagct
aaaatgatgaagcgcatgagcaatggcggcggcgcaggaatgcctggaatgggcggaatg
cctgggtttggcggtcctggcggaaagtcgaagcgtaaagacaagaagagcaagaagaag
ggcggaaagtctggtaatcctatgcgtcgcgaggccgaggagcgcgcgcttagagaacgc
ttgtctggaaattcttctgcaaatagtgcaaatgatgacgcgaatggcgagtctgctttt
atgaagaagaagcaggatttgcctaataatttgccagaaaatcttcaaaatcttatgagt
ggcgaaggcgactttgctgacgaaatgcctgatttaccgcctaatttgggcggcggactc
gcaggtcttttcggcagataa
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integrated database retrieval system
