Gardnerella vaginalis HMP9231: HMPREF9231_0457
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Entry
HMPREF9231_0457 CDS
T01939
Name
(GenBank) putative exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
gvh
Gardnerella vaginalis HMP9231
Pathway
gvh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gvh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HMPREF9231_0457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gvh03400
]
HMPREF9231_0457
Enzymes [BR:
gvh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
HMPREF9231_0457
DNA repair and recombination proteins [BR:
gvh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
HMPREF9231_0457
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
PIF1
Motif
Other DBs
NCBI-ProteinID:
AEF30889
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All DBs
Position
562712..563575
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AA seq
287 aa
AA seq
DB search
MITITTSNLNGIRAAWRKGMLDWVQDHTPDVWCMQEVRAPQDAIDPIMSKIKDLYTSKSG
ESGQNDRRFSVTNQICEIKGRAGVALVTTLPVVEQRYGLPGLSEDVDSGRWVETDVHTPQ
GYDITVASVYVHAGNVDDPQKMQQKFRFLDTMLKRLGELRDIAASGGNQAILCGDFNIAH
TPLDIKNAKANEKSAGFLPEERAYIDRWINEYEFVDVMRMLAGDIQGPYTWWSQRGKAFD
NNVGWRLDYQFATPEIAETACGFVIDRAQSYDSRWSDHAALNIKYNV
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgattacaattacgacttcaaatttgaatgggattcgtgcggcttggcgcaaggggatg
ctcgattgggttcaagatcacacgccagatgtgtggtgtatgcaagaggttcgcgctccg
caagatgcgattgatccgattatgagtaaaatcaaggatttgtatacgtctaaaagtggt
gaatctggtcaaaatgacaggcgattttctgttacaaatcagatttgtgaaataaaaggt
agagctggtgtggcgcttgtaacgactttgccagttgtagagcagcgttacggtttgcct
ggtttaagtgaagacgttgattctgggcgatgggtagaaaccgacgtacatactccgcaa
gggtatgatattactgttgcatctgtgtatgttcacgctggaaacgttgatgatccacag
aaaatgcagcaaaaattccgctttctagatactatgttaaagcgattaggggagcttaga
gatattgctgcaagtggcggaaatcaggcgattttatgcggtgattttaatattgcacac
acgcctcttgacattaaaaacgctaaagcgaatgagaaaagtgctggatttttgccagag
gaacgcgcttatattgatcgttggattaacgagtatgaatttgtggacgttatgcgtatg
cttgctggcgatattcaaggaccatacacttggtggagtcaacgaggtaaagcttttgat
aataacgttggatggagattagactatcagtttgcaacacctgaaattgcagaaactgca
tgcggattcgtaattgatcgtgctcaaagctacgattctcgctggtctgaccatgctgct
ttaaacataaaatataatgtgtga
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