Gardnerella vaginalis HMP9231: HMPREF9231_0632
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Entry
HMPREF9231_0632 CDS
T01939
Name
(GenBank) hypothetical protein
KO
K15255
ATP-dependent DNA helicase PIF1 [EC:
5.6.2.3
]
Organism
gvh
Gardnerella vaginalis HMP9231
Brite
KEGG Orthology (KO) [BR:
gvh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gvh03032
]
HMPREF9231_0632
03029 Mitochondrial biogenesis [BR:
gvh03029
]
HMPREF9231_0632
Enzymes [BR:
gvh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
HMPREF9231_0632
DNA replication proteins [BR:
gvh03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
HMPREF9231_0632
Mitochondrial biogenesis [BR:
gvh03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial DNA replication factors
Mitochondrial DNA maintenance factors
HMPREF9231_0632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIF1
AAA_30
AAA_19
Pif1_2B_dom
AAA_22
DEAD
Viral_helicase1
SH3_13
AAA_16
Zeta_toxin
nSTAND3
AAA
MeaB
NTPase_1
SLFN-g3_helicase
AAA_5
AAA_14
cobW
TrwB_AAD_bind
KAP_NTPase
AAA_18
KdpD
ABC_tran
MobB
AAA_24
NPHP3_N
AAA_7
NAT10_TcmA_helicase
AAA_25
ResIII
PhoH
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AEF31212
LinkDB
All DBs
Position
748748..750196
Genome browser
AA seq
482 aa
AA seq
DB search
MKQSEALTIINAGASVFITGAPGAGKTYVLNAAIREMRKNGLSVAVTASTGIAATHLNGQ
TIHSWSGVGVSNALSDSLLKTIRARRGKRIKATEVLVLDEVSMIHAWLFDMVDEVCRKVR
KNSAPFGGLQVVISGDFFQLPPVSTSMRNRDVFEPSPEFIESREKYAAAGKNPEGYITES
FAWDALKPVVCYLTEQHRQDDGKLLEVLTDIRGGLVSDEDKQVLASRLGEYPQDDEVSVH
LFPTNSQADGLNNVQLAAIDAEPHEFVATEAGPKNLVERLKKNMLAPERLVLKVGAAVMA
LRNDQDKQYVNGSVGRVLRFAPESKGGWPIIEFENGNIVTLKPAAWEMTDGETVLASINQ
VPLRCAWGITIHKSQGMTLDSAVMDLRRTFAPGMGYVALSRVENLGGLYLEGINDRAFSV
SADAVLLDGFLREASKKASKLLTNSGANSFIKNTLENEFVSQQELDIFASTSNDEFGFND
EF
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaatccgaagccctaaccataatcaacgctggtgcaagcgttttcattaccggc
gctccgggtgcaggtaaaacctacgtattaaacgcggctattcgcgaaatgcgaaaaaac
ggtttaagcgtggctgtaacggcttctacaggaatcgcagcaacgcatttaaacggtcaa
accattcactcgtggagtggagttggagtttcaaacgcgcttagcgattcgcttcttaaa
accattagagctaggcgagggaaacgcataaaagccacggaagtgctcgtgttggacgaa
gtttcaatgattcacgcgtggcttttcgacatggttgatgaagtatgccgcaaagtgcgc
aaaaactctgctcccttcggcggacttcaagtagttatttcgggagatttcttccagctg
cctcctgtgagtacttctatgcgaaatcgcgatgtgttcgagccaagtccagagtttatt
gagtcgcgcgaaaagtatgctgctgctggcaaaaatccagaaggctatattacggaatct
ttcgcctgggatgctttaaagcctgttgtgtgctatttaactgagcaacatcgtcaggat
gacggcaaattgcttgaagttttgacggatattcgtggcggtcttgtaagcgacgaagat
aagcaagtgcttgccagtcgccttggtgagtatccgcaagacgatgaagtttcggttcat
cttttccctacgaactcacaagcagatggtttaaataatgtgcagcttgcggcaattgat
gctgagcctcacgaattcgtggcaacagaagccggccctaaaaatctcgtcgagcgttta
aaaaagaatatgctcgctccagaacggcttgtattaaaggttggagctgcagtgatggcg
ttgcgaaatgatcaagataagcagtatgtgaacggctcggttgggcgagttttgagattc
gcacctgaatctaaaggcggatggccgattattgagtttgaaaacggcaatattgtcact
cttaagccggctgcttgggaaatgacggatggtgagactgttcttgctagcataaatcaa
gtgccacttagatgcgcgtggggaattacgattcataaatcgcaaggtatgacgcttgac
agtgcggtaatggatttgcgtagaacttttgctcccggaatgggatacgttgcgctttct
cgcgtggaaaatctgggcgggctttatttggaaggtattaacgatcgcgcgtttagtgtt
tcggcggatgctgtactgttagacggattcttgcgtgaggcttctaagaaagcaagtaag
cttcttactaacagtggtgccaattctttcataaaaaacacgttagaaaacgaattcgtt
agtcagcaggaacttgatatttttgcaagtactagcaatgatgagtttggattcaatgac
gagttttag
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