Gardnerella vaginalis HMP9231: HMPREF9231_0741
Help
Entry
HMPREF9231_0741 CDS
T01939
Symbol
aspS
Name
(GenBank) aspartate--tRNA ligase
KO
K01876
aspartyl-tRNA synthetase [EC:
6.1.1.12
]
Organism
gvh
Gardnerella vaginalis HMP9231
Pathway
gvh00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
gvh00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
HMPREF9231_0741 (aspS)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
gvh01007
]
HMPREF9231_0741 (aspS)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gvh03016
]
HMPREF9231_0741 (aspS)
03029 Mitochondrial biogenesis [BR:
gvh03029
]
HMPREF9231_0741 (aspS)
Enzymes [BR:
gvh01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.12 aspartate---tRNA ligase
HMPREF9231_0741 (aspS)
Amino acid related enzymes [BR:
gvh01007
]
Aminoacyl-tRNA synthetase
Class II (A)
HMPREF9231_0741 (aspS)
Transfer RNA biogenesis [BR:
gvh03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
HMPREF9231_0741 (aspS)
Prokaryotic type
Other AARSs
HMPREF9231_0741 (aspS)
Mitochondrial biogenesis [BR:
gvh03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
Other mitochondrial DNA transcription and translation factors
HMPREF9231_0741 (aspS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_2
tRNA_anti-codon
GAD
Motif
Other DBs
NCBI-ProteinID:
AEF31637
LinkDB
All DBs
Position
886798..888594
Genome browser
AA seq
598 aa
AA seq
DB search
MSQTAYRTHHAVEVTETLVGQNVTIAGWVDRRRDHGGVAFVDVRDNTGLVQVVIYDEETA
RPLRSEFVVQVTGEVRLRPDGNENDHLATGKIEIVANKMTILAKSDALPFQVSTALENES
ENKLPSEDVRLKYRYLDLRRPSMQRNLKLRSDMAKAARHALEDMDFTEVETPTFIKSTPE
GARDFVVPARLVPGSWYALPQSPQLLKQLLMVSGVERYYQLARCYRDEDFRADRQPEFTQ
LDMEMSFASQEDVMAMAERVIAAIWKEAGHEITLPLPRITWQEAMDKYGSDKPDLRFGNP
LIELTDFFKNTPFRVFQAPYVGAVLFKGGADTPRRQFDAWQDWAKQRGAKGLAYVVFGED
GELKGPVAKNLSEEERAGLKEAVGAQDGDAVFFAAGSRESSQLLLGAVRVELASRAGLLH
PDEFAFTWVVDFPLFKRTDDPDDDDVAVGHSKWTSMHHPFTMPSADWIDKFDKDPEHAMS
DSYDIVCNGNEMGGGSVRIHRDDIQDRVLDVLGIDKAEAEEKFGFLLEAFKYGAPPHAGI
ALGWDRTAAILAGASSIRDVIAFPKAGGGRDPLTGAPAPISDEQRAETGVDYDPEEDE
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgagccagacggcgtatcgcacacaccatgccgttgaagtgactgagaccttggtcgga
cagaacgtaaccattgctggttgggttgatcgtcgccgtgatcacggtggcgtcgctttc
gtagatgttcgtgacaacacaggtttagtgcaggttgttatttacgatgaggaaactgcg
cgaccattgcgtagtgaatttgttgttcaggttactggcgaagttcgcctgcgtccagat
ggcaatgaaaatgaccatttagcaacaggaaaaatcgaaatcgttgcgaataaaatgaca
attctcgctaagtccgatgcgttaccattccaggtttctacagcattggaaaacgagtct
gaaaacaagcttcctagcgaagatgttcgtttgaagtatcgttatcttgatttgcgccgc
ccatcaatgcagcgtaatctaaagcttcgctctgatatggctaaggcagctcgtcacgct
ttggaagatatggactttacagaagtagaaacgccaacgtttattaagtccactccagaa
ggcgctcgcgactttgttgttccagcacgtttggttccaggctcttggtacgctcttcca
cagtctccgcagcttttaaagcagttgcttatggtttctggtgttgagcgctactatcag
cttgctcgctgctatcgtgatgaagatttccgtgctgatcgtcagcctgagttcactcag
cttgatatggaaatgagctttgcaagccaagaagatgttatggctatggcagagcgcgtt
attgctgctatttggaaggaagctggtcacgagattactcttcctttgcctcgaatcact
tggcaggaagctatggataagtacggttccgacaagcctgatttgcgttttggaaaccca
cttattgagttgactgacttctttaagaacactccattccgcgtgttccaagctccttat
gttggcgctgtgctctttaagggcggtgcagatacacctcgtcgtcagtttgacgcatgg
caggattgggctaagcagcgtggagctaagggcttggcttatgtagtctttggtgaagat
ggtgagctaaaaggccctgttgctaagaatcttagcgaagaagagcgtgcaggacttaag
gaagctgttggtgcgcaagatggcgatgctgtattctttgcagcaggaagccgtgaatct
tctcagcttttgcttggtgcagttcgtgtagagcttgcaagccgcgcaggattgcttcac
ccagacgagtttgcgtttacttgggttgttgacttcccattgtttaagcgcacagatgat
ccagacgatgatgatgttgcagttggccattctaagtggacttctatgcaccatccattt
acaatgccatctgctgattggattgataagttcgataaagatccagagcatgcaatgagc
gattcttacgatatcgtgtgcaacggtaacgagatgggcggtggctccgttcgtattcac
cgcgacgatattcaagatcgcgtgcttgatgttcttggaatcgacaaagcggaagcagaa
gaaaagttcggcttcttgcttgaagcctttaagtacggtgctccacctcacgctggtatt
gctttgggctgggatcgtactgctgcaattcttgcaggcgcaagctcgattcgcgacgta
atcgccttccctaaggctggcggcggacgcgaccctctaactggcgctcctgctccaatt
tctgacgaacagcgtgctgaaactggcgtcgattacgatccagaagaagacgagtaa
DBGET
integrated database retrieval system
