Gardnerella vaginalis HMP9231: HMPREF9231_0766
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Entry
HMPREF9231_0766 CDS
T01939
Name
(GenBank) AMP-binding enzyme
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
gvh
Gardnerella vaginalis HMP9231
Pathway
gvh00061
Fatty acid biosynthesis
gvh00071
Fatty acid degradation
gvh01100
Metabolic pathways
gvh01212
Fatty acid metabolism
gvh02024
Quorum sensing
gvh04146
Peroxisome
Module
gvh_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
gvh00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
HMPREF9231_0766
00071 Fatty acid degradation
HMPREF9231_0766
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
HMPREF9231_0766
09145 Cellular community - prokaryotes
02024 Quorum sensing
HMPREF9231_0766
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
gvh01004
]
HMPREF9231_0766
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gvh04147
]
HMPREF9231_0766
Enzymes [BR:
gvh01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
HMPREF9231_0766
Lipid biosynthesis proteins [BR:
gvh01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
HMPREF9231_0766
Exosome [BR:
gvh04147
]
Exosomal proteins
Exosomal proteins of breast milk
HMPREF9231_0766
Exosomal proteins of breast cancer cells
HMPREF9231_0766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
FAM25
Motif
Other DBs
NCBI-ProteinID:
AEF31121
LinkDB
All DBs
Position
complement(911416..913395)
Genome browser
AA seq
659 aa
AA seq
DB search
MRDPQGVIAQWQDDDTRQWHDVTASEMLLKVRATAKGLIALGVERGSKVVIYSPTCYEWG
VADFACACIGAVSIPIYETDSAIQAAEIISEVKPVIAFAGDDEHAQCLERVRQDNKRMSL
KTIFNFKAAGIDAVIDFGKSISDDELNNSICQVKADDLATIVYTSGSTGKPKGAMLSNRN
FTHIVYAAYDVLNDMLYKPSRLLLFLPLAHCFARYIQYVAIGSHGVIGYVPNAKHLLADL
RSFKPTYLLGVPRVFEKVYNAASQKAGAGIRGRIFAKAVQHFIEWSKDEVEGRTHSIYAK
LQHDFYMKTVGSSIRSALGPNLSWLACGGAPINAELAHFFNGLDGITFIQGYGMTETAAP
CVVNFEHANQVGSVGRPGPGITIRIADDGEVLVKGPNVFIGYYDKPDLTSDVIDEDGWLH
SGDLGEIDDEGFLSITGRKKDIIITAGGKNISPAPLESIISKCPLVSHAVVVGDGKPFVS
ALIEVEPDMVRSWLKSQGMDENLSMSAVAENDAIRSVVQQFIDQANSTVSRAESIRKFII
LDEEFSQETGTLTPSMKVVRPKVLKRYCDLIENQLYAPKPNSRPLPATVKILDKTTETVK
QAQETVKQAQEAVTPRVKQAIDQAATHLKRFGEDLPTQVNVKDQHTEYAEKNNNSNDKE
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgcgagatccacaaggcgtaatagcccaatggcaagacgatgatactcgtcaatggcat
gatgttactgcatctgaaatgctattaaaagttcgtgcaacagctaaggggttgattgct
cttggcgttgaacgaggaagcaaagttgttatttattccccaacctgttatgagtggggc
gttgcggattttgcttgcgcttgcattggtgctgtaagcattccgatttatgaaacagat
tcagcaatccaagctgctgaaattatttctgaagtaaagcctgtgatagcttttgcaggt
gatgatgaacatgcgcaatgtttagagcgagttcgccaagacaataagcgtatgtcttta
aagactatttttaactttaaagctgctggaatagatgcagtgattgattttggaaaatca
atcagcgatgacgaacttaataacagcatatgtcaagtaaaagctgatgatttagcgact
atcgtatacacctctggttcaactggaaaaccaaagggtgcaatgctttccaataggaat
tttacgcatattgtgtatgcagcttatgacgttttaaatgatatgctttataagccaagt
agactattgctattccttccgttagctcattgctttgccagatacatacagtatgtggca
ataggttctcacggtgttattggatatgtgccaaatgcaaagcatttattagcagatttg
cgtagttttaaacctacatatttgcttggagtcccaagagtgtttgaaaaggtttataat
gctgcgtctcaaaaagctggagcaggtatacgcggtaggatttttgcaaaggctgtacaa
cattttattgagtggtctaaagatgaagttgaaggtagaacacactcaatttatgcaaaa
cttcagcatgacttttatatgaaaactgttggatcttccatacgatctgctttgggacct
aatttatcatggctagcttgcggcggagctccaataaacgctgagcttgctcatttcttt
aacgggttggatggaataacctttattcaaggttatggaatgaccgaaacagcagctcct
tgtgttgttaattttgagcatgctaatcaagttggttctgtgggtcgccctggtcctgga
attactatccgtattgcagatgatggagaagtccttgtaaaaggtcctaacgtttttatc
ggatattatgataagccagatcttacttcggatgttattgacgaagatggatggctccat
tctggagatttaggcgagatcgacgatgaaggattcttgtctattactggtagaaagaaa
gatattattatcactgctggtggaaaaaatataagtccagcgcctttggaaagtattatc
tctaagtgtcctctcgtatctcacgcagtagttgtaggagacggtaagccatttgtttcc
gctttgattgaggttgagccagatatggttcgttcttggcttaagagtcaaggaatggat
gaaaatctttctatgagtgctgttgcggaaaacgatgctattcgttctgttgtacaacag
tttattgatcaggcaaatagcactgtttctagggctgagtctattcgtaaatttattatt
ttggatgaagaattttcacaagaaactggcactttgactccaagcatgaaagttgtgcgt
cctaaggttttgaagaggtattgtgatcttatagagaatcagctttatgctccaaaacca
aacagtagaccattacctgctacagttaagattttagataagacaactgagactgttaag
caagcgcaagaaactgttaaacaggctcaagaagcggttactcctagagttaagcaagca
atcgatcaggctgctactcatctgaaacgttttggtgaggatttgcctacacaggttaat
gtaaaagatcagcatactgaatatgctgagaagaataataattctaacgacaaagaatag
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