Gardnerella vaginalis HMP9231: HMPREF9231_0806
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Entry
HMPREF9231_0806 CDS
T01939
Symbol
carB
Name
(GenBank) carbamoyl-phosphate synthase, large subunit
KO
K01955
carbamoyl-phosphate synthase large subunit [EC:
6.3.5.5
]
Organism
gvh
Gardnerella vaginalis HMP9231
Pathway
gvh00220
Arginine biosynthesis
gvh00240
Pyrimidine metabolism
gvh00250
Alanine, aspartate and glutamate metabolism
gvh01100
Metabolic pathways
gvh01110
Biosynthesis of secondary metabolites
gvh01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
gvh00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
HMPREF9231_0806 (carB)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
HMPREF9231_0806 (carB)
00220 Arginine biosynthesis
HMPREF9231_0806 (carB)
Enzymes [BR:
gvh01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.5 Carbon-nitrogen ligases with glutamine as amido-N-donor
6.3.5.5 carbamoyl-phosphate synthase (glutamine-hydrolysing)
HMPREF9231_0806 (carB)
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GFIT
Motif
Pfam:
CPSase_L_D2
CPSase_L_D3
MGS
Dala_Dala_lig_C
ATP-grasp
GARS_A
ATP-grasp_4
ATPgrasp_Ter
ATP-grasp_2
RimK
CoA_binding_2
Arc_PepC
Motif
Other DBs
NCBI-ProteinID:
AEF31010
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All DBs
Position
complement(959856..963251)
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AA seq
1131 aa
AA seq
DB search
MPKRADIKSVMVIGSGPIVIGQAAEFDYSGTQACRVLHEEGIRVILVNSNPATIMTDPEL
ADATYIEPIDTAILERIIAKEKPDALLPTLGGQTALNAAMDLGRAGILEKYNVELIGASL
EAIDRGEDRELFKKVVEKAGAESAKSFIAHSIEEVDKIVETLGYPVVVRPSFTMGGLGSG
IAHNQEELHRIAGAGIHYSPTNEVLIEEGIEGWKEFELELMRDSKDNVVVVCPIENVDPV
GVHTGDSITVAPCFTLTDREYQKMRDIGIAIIRGVGVDTGGCNIQFAINPRTGRIIVIEM
NPRVSRSSALASKATGFPIAKIATKLALGYTLDEIQNDITRSTPASFEPTIDYVVTKIPR
FAFEKFPGADTTLTTSMKSVGEAMALAGNFQESLGKAMRSIDKRHACFNWDGERPSKEEV
AKLLEEIHTPTEHRYLQIQRALWGGATPEQIFDATKIDPWFVEQLSLINKTALEVREAEN
LTPKVLKNAKLAGLSDVQIAHLRNLGDEGENMVRELRWAYGLHPVYKTVDTCAAEFDAVT
PYYYSCYADESELKPRDREAVIILGSGPNRIGQGIEFDYTCVHAVQELGKDYDTIMVNCN
PETVSTDYDMSDRLYFEPLTFEDVLEIYQAEKKLGPVKGVIVQLGGQTPLSLAARLKAAG
VPILGTTPEAIDLAENRELFGEVLRQEGMNAPRYGTALSLEEAKDAAHAIGYPVLVRPSY
VLGGRGMEIVYDDAQLAKYVDRALQEAQADTVVSGRLPSPLLIDKFLQDAIEIDVDALYD
GNELYIGGIMEHVEEAGVHSGDAACTLPPSTLSDDQIRRLREGTLSIARGCSVRGLINVQ
YAFMANTLYVIEANPRASRTVPFASKATGVALAKAAARIMAGETIAQQRKRGLLLPKGDG
GDIHPGQQVAIKASVLPFKRFRTPVGRTVDILLGPEMRSTGEVMGFDRDFPHAFAKSQLA
AYKGGLPTSGNVFVSVSDADKRQLPLLAVRLVELGFTIWATEGTASVLRRYGIDSVIVDK
LSSLGDTAKDVRNAEPSHERIGKNVVELIENGKIDMVLNTPNSRGSRTDGYAIRAAAVAA
DLPQFTTITEFAPVLMAIEAVKNNDYQVMSIQEHAKQLFAIEKAENEESRA
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacgtgctgatattaaatccgtaatggttattggttctggtccaatcgtaatt
ggtcaggctgcagaattcgactactctggaacgcaagcttgccgagtccttcacgaagaa
ggaatccgcgtaattcttgtaaactctaatcctgctactattatgacggacccagagctt
gcagacgcaacatatattgagccaatagacacggcaattttggagcgcattattgctaaa
gagaagccagatgcgcttcttccaacattaggtggtcaaactgctcttaatgccgcaatg
gacttgggtcgtgcaggaatcttagaaaagtataatgtagagcttattggtgcatctctt
gaggcaatcgaccgcggagaggaccgtgagcttttcaaaaaagttgttgaaaaagctggg
gcagaaagtgcaaaatcctttattgctcactcaattgaagaagtagacaaaattgttgaa
acactagggtacccagttgttgtgcgtccaagcttcacaatgggaggtttaggctctgga
attgctcacaatcaggaagaattacaccgcattgcaggagcaggcattcactattctcca
acaaacgaagtgcttattgaagaaggcattgaaggttggaaggaatttgagcttgagctt
atgcgagattccaaagacaatgttgttgttgtgtgcccaatcgaaaatgttgatcctgta
ggcgttcacacaggcgactcgattacagttgctccatgctttacgctaacagatcgcgag
tatcaaaagatgcgtgatattggcatcgcgattattcgaggtgttggcgttgacactggc
ggatgcaatattcagtttgcaatcaatcctcgaactggtcgcattatcgtaatcgaaatg
aatccgcgagtttcgcgttcttctgcgctagcatctaaagcaactggtttcccgattgca
aaaatcgctacaaaacttgccctcggatacactttggacgaaattcaaaacgatattacg
cgttcaactcctgcaagctttgagccaacgattgactatgttgtaactaagattccgcgc
tttgcttttgaaaagttccctggagcagacactacgcttacaacttctatgaagtcagtc
ggcgaagcaatggctttggctggaaatttccaggaatctcttggaaaagcaatgcgatca
attgataaacgtcacgcttgctttaattgggacggcgagcgcccaagtaaagaagaagtt
gctaagcttcttgaagaaattcatactccaaccgagcaccgctacttgcaaattcagcgc
gcgctctggggtggggctactcctgagcagatttttgacgcaacaaagatagacccatgg
tttgttgagcagctttcgttaattaacaaaacagctttagaggttcgtgaagcagaaaat
ttgacgccaaaagtgttaaagaatgctaagcttgctggtctttcggatgttcaaattgcg
catttgcgtaatcttggcgacgaaggcgaaaacatggttcgtgagctgcgttgggcgtat
ggattgcatcctgtttacaaaacggttgacacgtgtgctgccgagttcgacgctgtaacg
ccttactactattcttgctacgctgacgaaagcgagcttaagccacgcgatcgtgaagct
gtaatcattcttggctctggtccaaacagaataggtcagggtattgagtttgactacact
tgcgttcatgctgtgcaagagctgggtaaggattacgacacaattatggtcaattgcaat
cctgaaacagtttctacagactacgatatgtcggatcgcctttactttgagccgcttact
tttgaagacgtgctcgaaatttaccaagcagaaaagaagcttggtccagtaaaaggtgtt
attgtgcaacttggcggccaaactccactttcgcttgcagcgcgccttaaagctgcagga
gttccaattttgggcactacgcctgaggctattgatttggcagaaaatcgcgagcttttc
ggtgaggttcttcgtcaagaaggcatgaatgctccgcgctacggcactgcattaagcctt
gaagaggctaaggatgctgctcacgcaattggttaccctgttcttgtgcgaccaagttat
gtgcttggcggtcgtggcatggaaatcgtgtacgatgatgctcagcttgcaaaatatgtg
gatcgtgctttacaggaagctcaagcagacactgttgtttctggtcgtttgccttcgccg
cttttgattgataagttccttcaggatgctattgagattgatgttgacgcactttacgac
ggcaacgagctttatattggcggaattatggagcatgttgaggaagctggcgtacactct
ggtgacgctgcttgtactcttcctccaagcacgctttccgacgatcaaattcgtagactt
cgcgagggcacgctttcgattgctcgcggatgctcagttcgtggtcttattaatgtgcaa
tacgcttttatggcaaacactttgtacgtaattgaggcgaatcctcgagcatctcgtact
gttccgtttgcttctaaagctacgggagttgctcttgctaaagctgctgctcgaattatg
gctggggaaacaatcgcacagcagcgaaagcgcggtcttcttcttcctaagggagatggt
ggagatattcacccaggccagcaagttgctattaaagcttccgtcttgcctttcaaacgt
ttccgcacgcctgttggtcgcacagtcgatattttgctcggaccagagatgcgctctact
ggagaagttatgggctttgaccgcgacttcccacatgcttttgctaagagccagcttgca
gcgtacaagggcggtttgcctacaagcggcaatgtgtttgtgtctgtaagtgatgcagat
aaaaggcaattgccgctacttgcagtgcgcctagtagagcttggatttactatttgggct
accgaaggtacagcatctgttcttagacgctacggcattgattccgttattgttgataag
ctttctagccttggcgacacggcgaaggatgtgcgaaatgctgagccttcgcatgaaaga
atcggcaaaaacgtggttgagctgattgagaatggtaagattgatatggtgttgaacacg
ccgaattccagagggtcacgtacggatggttatgctattcgtgcagctgctgttgcagca
gaccttccgcaattcactacaattacggagtttgcaccagttcttatggctatagaagct
gttaagaacaacgattaccaggtgatgagcattcaggagcatgccaagcaactgtttgca
atcgaaaaggcagaaaacgaagaaagtcgggcttaa
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