Gardnerella vaginalis HMP9231: HMPREF9231_0826
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Entry
HMPREF9231_0826 CDS
T01939
Name
(GenBank) putative DNA polymerase III, delta subunit
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
gvh
Gardnerella vaginalis HMP9231
Pathway
gvh03030
DNA replication
gvh03430
Mismatch repair
gvh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gvh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMPREF9231_0826
03430 Mismatch repair
HMPREF9231_0826
03440 Homologous recombination
HMPREF9231_0826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gvh03032
]
HMPREF9231_0826
03400 DNA repair and recombination proteins [BR:
gvh03400
]
HMPREF9231_0826
Enzymes [BR:
gvh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HMPREF9231_0826
DNA replication proteins [BR:
gvh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HMPREF9231_0826
DNA repair and recombination proteins [BR:
gvh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HMPREF9231_0826
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta_C
Motif
Other DBs
NCBI-ProteinID:
AEF31406
LinkDB
All DBs
Position
complement(985532..986503)
Genome browser
AA seq
323 aa
AA seq
DB search
MQALKKFAPFTVVVGGDAYLNDLNARDLKTRILGSYPDADVINLDALNADKYAFITATGP
SLFSSGTIVVINNLEQANEDLVEAIIGFCTRESKSNNNDCWVIARHEGGVKGKSIVTKLE
KAGASKITVPDLKKDDARLNFVLSLFERQNRSIEPAAAGRITEVLGGKTDQLAALCSQLC
FDFEDNPITLKIVDQYLISDPQVTGFFVADKAAEGNYAQAILASRRAILQGVDAIALIGA
LAAKMRIITKAIAVKNGEISNAQAKVNPWALKMAMRDLGGWNDDGIRKCFKCLAWADEQC
KGGTSDADYALEKCISMIACRGR
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcgttaaaaaaatttgcgccatttacagttgtggttggcggtgatgcgtattta
aatgatttaaacgcgcgcgacttaaaaactcgcatattaggctcctacccagatgcagat
gttataaatttagacgcattaaatgccgataaatatgcttttataactgctacaggacca
tcacttttttctagcggaacaattgttgttattaacaatcttgaacaagctaatgaagat
ttagtcgaagcaataatagggttttgtactagagaatctaaatctaataacaatgattgc
tgggttattgcgcgccacgaaggaggtgttaaaggaaagtcaattgttacaaaacttgaa
aaagctggagcaagtaaaataactgtaccagatcttaaaaaagatgatgcaagattgaat
tttgtgctaagtctttttgaaaggcaaaatcgtagtatagagcctgcagcagctggacgc
ataacagaagtcttaggcgggaaaaccgaccagttggcggctctttgttctcaattgtgc
tttgattttgaagataacccaatcacactaaaaatagttgaccaatatttaatatcggat
ccgcaagtaactggattttttgtagcagataaagctgcagaaggtaactatgctcaagct
attcttgcatcaagaagagcgattttacaaggcgttgatgctatagcattgattggggct
ttagctgcaaaaatgcgaataattacaaaggctatagctgttaaaaacggggaaatttct
aatgctcaagcaaaagttaacccttgggcgttaaaaatggctatgagggatttaggtgga
tggaatgatgatgggattcgtaagtgttttaaatgtttagcgtgggcagatgagcaatgc
aaaggcggaacaagtgatgctgattacgctttagaaaaatgcattagcatgattgcttgt
cgtgggcgttaa
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