Gardnerella vaginalis HMP9231: HMPREF9231_0851
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Entry
HMPREF9231_0851 CDS
T01939
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gvh
Gardnerella vaginalis HMP9231
Pathway
gvh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gvh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HMPREF9231_0851 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gvh03400
]
HMPREF9231_0851 (mfd)
Enzymes [BR:
gvh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMPREF9231_0851 (mfd)
DNA repair and recombination proteins [BR:
gvh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HMPREF9231_0851 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AroM
nSTAND3
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AEF31047
LinkDB
All DBs
Position
complement(1012756..1016358)
Genome browser
AA seq
1200 aa
AA seq
DB search
MANKSDFFANNMSDSKDFINSNVSFENILKDILDKNEAFKSLVSNVLDFPNPLTVASPLG
SRPAIAAAISKSSTVVLITPSGRDASDAVSSIRDWYDGDPQDIAELEAWETLPHERLSPR
ADTVASRMSVFRRLKHPQSGKNRMFSPIRVLVMPVRSIIQPVVENISDVEPLVFECGKEV
PIDSAVKRLVENSYNRVELVMNRGEFAVRGGIIDVFSPTMNHPVRIEFFGDEIDTIKQFH
ASDQRTYGENINSIWATACRELQLTKDIQNRAKSLIGKIQNADDMLESISNAIPVEGMES
LLPALVDKMEPVENLLPKNSIILISDPEKCRRAAQDLSRTANEFLAASWHVAASGRGAGA
PITFDQASFLDFDETLASLENKNHQVINLTSFGSDKSQATVGLKESDENKIVKNSRLELS
IKSPQEFRGDNEKISSGISGIIANGFKVYIIASAYGTLSRLSRAIQSTGIFDFVPIQSQI
VDGFIDEQSKIAILTERDLTGKTSSASALKTPRRRRKSIDLLDLKPGDFVVHDQHGIGKF
IGMRQRNIKTSSGEATREYLEIEYAPSKRNAPADKLFIPADQLDLVSKYIGAEIPKLNKL
GGSDWAATKAKAKKHVQEVAEDLIKLYSARASTKGFAFSSDTPWQKELEDAFPYQETPDQ
LTTIDEVKQDMQKPIPMDRLICGDVGFGKTEIAVRAAFKAVQDGKQVVVLAPTTLLVQQH
YETFTNRFSGFPVTVAAMSRFQSAKEIDATMQGIESGQVDVVVGTHKLLNPNIKFKDLGL
VIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLP
VLTYVGAYEDAQVAACVKRELLRGGQVFYVHNRVEDISKIASNIQKLVPDARVAIAHGKM
GEKQLDTIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQLRGRVGR
GRERAYAYFLYDPTKPMTQQAHDRLATIAQYTALGSGFDVAMKDLELRGTGNLLGDAQSG
HIEGVGFDLYVRMVSEAVEKYKEPDHKESISVSIDLPIEASIPVSYIDSDKLRLEAYRKL
AEAQNDEDLKEIFNELSDRYGNPPKSLQTLFDVARLRFKAKQMGINQISMQGKTVRVIGV
DPAQSVWMRLSRIYRGAQFKPVTHTMIFPSPFASVLGDSSSMSEKEIVEWAKQLLEDIDW
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atggcaaataaatctgatttttttgctaacaatatgtcagattctaaagattttataaat
tctaacgtttcttttgaaaatatacttaaagatattttagataaaaatgaagcgtttaaa
tctttagtttctaacgtgctagattttccgaatccgcttactgtagcatctcctttaggt
tctagacctgctatagcagctgcaatatcaaagagtagtactgttgttctaattactcca
tctggtagggatgctagtgacgctgtttcttcaatacgcgattggtatgatggagatcct
caggatattgccgaactcgaggcttgggagactcttcctcatgagcgtctttctcctaga
gcagacactgtggcaagtagaatgtcggtttttagaagattaaaacatcctcaaagtggc
aaaaatagaatgtttagcccaattcgtgtgcttgttatgccagttcgttctattattcag
ccagttgttgaaaatatttcagatgtggagcctcttgtttttgaatgtggtaaagaagtt
cctatagattctgctgtaaaacgtcttgttgaaaactcatataatcgcgttgagttggtt
atgaatcgtggagaatttgcggttagaggtggaataatagatgttttttctccaacgatg
aatcatcctgttagaatcgaattttttggagacgaaatcgacacgattaagcagtttcat
gcatctgatcagcgcacatacggtgagaatattaatagtatttgggctactgcttgtaga
gaattacagcttacaaaggatattcaaaatcgtgcaaaatctttgattggtaaaattcaa
aatgctgacgacatgttggaatccatatcgaatgcaataccagtagagggtatggagtcg
ttgcttccagcattagttgacaaaatggaaccagtagaaaatctgcttccaaaaaattct
ataatattgatctctgacccagaaaaatgtaggcgcgcagctcaagatttaagtagaact
gctaatgaatttttggcagcaagctggcatgtagctgcatctggtagaggagcaggtgct
ccaatcacattcgatcaggcgagttttcttgattttgatgaaactttagcaagcttagaa
aataagaatcatcaggtaataaatttaacgagttttggatctgataagtcgcaagcaacc
gtaggtcttaaagaatctgacgaaaataaaattgtaaaaaatagccgtctagaattgagc
attaaatctcctcaagaatttagaggagacaatgaaaagatttctagtggaatatctggt
attatagcaaacggatttaaagtttacataattgcatccgcatatggaacattatctaga
ctaagtcgcgcaatacaatcaactggaatttttgattttgtaccgattcaatcgcaaata
gtggacggattcatagatgaacaaagtaaaatcgctattcttacagaaagagatttgact
ggaaaaacatcttctgcaagcgcgcttaaaactcctaggagaagacgaaaatcaatagac
cttctagatcttaaaccaggcgattttgttgttcacgatcagcatggaatcggcaaattt
ataggcatgaggcagcgaaatataaaaacctcaagtggagaagctactcgtgaatacttg
gaaattgaatacgcgccaagtaaacgtaatgcgcctgccgacaagctttttattccagcc
gatcaactcgacttggttagcaaatatattggggctgaaataccaaagttaaacaaactt
ggaggatcagattgggctgctacaaaggcaaaagctaaaaagcatgttcaagaagttgca
gaagatttaatcaagttatattcagccagagcatctactaaaggttttgccttcagctct
gacactccgtggcaaaaagagctggaagatgcatttccgtatcaagaaacgccggatcag
cttactactattgacgaagttaaacaagatatgcagaagccaattccaatggataggttg
atttgcggagatgttgggtttggcaaaacggaaattgctgttcgagctgcatttaaagct
gttcaagacggtaaacaagtagttgttctagcgccaaccactcttttggttcagcagcat
tacgagacttttactaaccgtttttctggcttccctgtaacagttgccgcaatgagcaga
ttccagagtgcaaaagaaatagacgctacaatgcaaggaatagaatcagggcaagtagat
gttgttgttggaactcataaacttttaaatccaaatataaaatttaaagatttaggatta
gtgattatagacgaagaacaacgttttggtgttgaacataaagaaactttaaaagctcta
cgaacaaatgtagatgtgcttagcctttctgcaacgcctattcctagaacgcttgaaatg
gctgttacgggtattcgtgaaatgtctacgcttgctacgcctccagaagatcgtctacca
gtcttgacttatgttggagcatatgaagatgcacaagttgcagcctgtgttaaacgtgaa
ttattgcgtggaggacaagtattttacgttcataatcgcgtagaagatattagtaaaatt
gcctctaatattcaaaaacttgtgccagatgctcgagtggcgattgcgcacggaaaaatg
ggcgagaagcaacttgacactattattcgtgatttttggcatagggatattgatgttctt
gtttgcactacgattattgaaacaggattagatatttctaatgcaaatacgcttattgta
gatcacgctgacagattcggcttaagtcagcttcatcaattacgaggacgagttggcaga
ggtcgtgagcgcgcatacgcatactttttgtacgatcctactaagcctatgactcagcag
gctcacgacaggcttgcaacaatcgctcaatatactgctcttggctctggttttgatgtt
gctatgaaggatttggaattgcgcggaactggcaatttgcttggagatgctcagagtggg
catattgaaggagtcggattcgatttatatgttcggatggtatctgaagctgttgaaaaa
tataaggaaccagatcataaagagtccatatctgtttctattgatttgccaatagaagcc
tcaattccagtatcttatattgattcagataaattacgtttggaagcttataggaagctt
gctgaggctcagaatgatgaagacttaaaagagattttcaatgagttaagcgatagatat
ggaaatcctcctaaatccttacaaacattatttgatgttgcaagattacgttttaaagct
aaacaaatgggtattaatcaaataagcatgcaaggtaaaactgtgcgcgttattggcgta
gatccagctcaatctgtttggatgcgtttgagtaggatctacaggggagcacagtttaag
cctgtaacccacacaatgatttttccatctccttttgcgtctgttttaggggattcatcg
tctatgagtgaaaaagagatagtcgaatgggctaagcaacttttagaagacattgattgg
taa
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