Gardnerella vaginalis HMP9231: HMPREF9231_0916
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Entry
HMPREF9231_0916 CDS
T01939
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
gvh
Gardnerella vaginalis HMP9231
Brite
KEGG Orthology (KO) [BR:
gvh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gvh03016
]
HMPREF9231_0916
Enzymes [BR:
gvh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
HMPREF9231_0916
Transfer RNA biogenesis [BR:
gvh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HMPREF9231_0916
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
DUF6226
Motif
Other DBs
NCBI-ProteinID:
AEF31423
LinkDB
All DBs
Position
complement(1093544..1094917)
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AA seq
457 aa
AA seq
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MNKEPKLLKEPREGVPEVIDTLEAYKEYCNLLASGSGSLAADAERASGFRYGHEDWLIQF
KRKGAGIGLLDPIALGKLGVDWHEFNEAVGDAPWIIHDSMQDLPGFFDIGLRPRALFDTE
IAAKLLGRKRFGLSSVTEYYLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELEEV
MSGELKKQGKLLWANQEFAHLLSKGAQKKAPHPNPWLRISHISVLMHDKIGLMIAKELWQ
KRDELARQYDIAPTLLLSDAAIIEAGKRKPSNSREFRSIRILNERVRIHTGSEQDKMFER
YAPIQRKIKPNVWKAVIEDAISRAKSGEVAIVSKLDDSSSKYGNYNDSGDSDNSADAGDS
ADSSDAQESQAAPRSMKYWRDHHPKRYERLQNVKQSLIKIAEDTHTPTEIIIKPQIIRNL
CWQDNIEHINVKEFLVEQGARTWQSDLIAESVTRAIM
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
ttgaataaggaaccaaagctcttaaaagagcctagagaaggagttccagaagtcattgat
acgcttgaagcatataaagaatattgtaatttgttagcatcagggtcggggtctttggct
gcagacgcagagcgcgcatctggttttagatatggtcacgaagattggctgattcagttc
aaacgcaaaggtgcaggaattggattgctggacccaatagctttaggaaaacttggcgtt
gattggcatgaatttaatgaggcagtaggggatgcgccttggattattcacgattctatg
caagatttgccaggatttttcgatattggtttgcgtccgcgtgctttatttgatacagaa
atcgcagctaaattgcttggtagaaagcgctttggattaagctctgtgactgaatattat
ttggggttgactcttgcaaaagaacattctgcagcggattggtcatatagacctcttcct
agagattggcgaaattacgcggctttagacgttgaattgctaatcgaattagaagaagta
atgagcggcgagttaaaaaagcaaggcaagcttttatgggcaaatcaagagtttgcacac
ttgttaagtaaaggtgcgcaaaagaaggctcctcacccaaatccttggcttagaatatct
catataagcgttcttatgcacgataaaatcggcttaatgattgcaaaagagctttggcaa
aagcgagatgagcttgctcgtcaatacgatattgcgccaactctattgctttcggatgct
gcgattattgaggcaggcaagcgaaagccaagtaattctagggagtttcgctctattcgc
attcttaacgaacgtgttaggattcacacaggcagcgagcaagacaagatgtttgaacgc
tatgctccgattcagcgcaaaatcaagccaaatgtgtggaaagctgttatagaagacgcg
attagtcgcgctaaaagtggggaagttgctattgtttctaagcttgatgattcaagtagt
aaatatggcaattacaacgattctggcgattctgacaattctgcggatgctggcgattct
gcggattctagcgacgcacaagaatcgcaagcagctccacgatctatgaagtattggcgt
gatcatcatcccaaaagatatgagcgcttacaaaatgtaaagcagtctttaatcaagatt
gcagaagatacgcatactcctacagaaatcattattaaaccgcaaattattcgcaatctt
tgttggcaagataatattgagcatattaacgttaaggagtttcttgtagagcagggcgca
agaacgtggcaaagcgatttaattgcagagtccgtaactcgcgctattatgtaa
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