Gardnerella vaginalis HMP9231: HMPREF9231_0926
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Entry
HMPREF9231_0926 CDS
T01939
Symbol
thiC
Name
(GenBank) thiamine biosynthesis protein ThiC
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
gvh
Gardnerella vaginalis HMP9231
Pathway
gvh00730
Thiamine metabolism
gvh01100
Metabolic pathways
gvh01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
gvh00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
HMPREF9231_0926 (thiC)
Enzymes [BR:
gvh01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
HMPREF9231_0926 (thiC)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ThiC_Rad_SAM
TMP-TENI
ThiC-associated
Motif
Other DBs
NCBI-ProteinID:
AEF31152
LinkDB
All DBs
Position
1104002..1106620
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AA seq
872 aa
AA seq
DB search
MRDQFNLNTCFIANPKLCKSRALTDIVDDSLRAGSTFIRLNCADESAKEITSIARDIAQI
IEDNDKCDSVTFVIDGRVDVVWQARNQGIKVDGVHLAQSDMEPKEARALLGEDTIIGLSV
ETESLVKIINELPDGCIDYICVTAMHNPEDGCENTTPTYELEPNHTILDEAKINTICSAS
NFPVLVGGRTSLEDVEMIARSKAAGLFVSEALYASETPESTMSEFVERFTQIRGNQKHGY
AKRVIIQEKADDKANNTPKFINAKEAKDAAKLAKQQRVDIASRGCTQRDKAHIRKTTPVH
FEYEYGSYDLEVPYTEIKLSDTPGVGPNPPFKDYNTEGPKCDPKEGLAPLRLDWIRDRGD
IVEYEGRSRNLQDDGKRAIKRGKASKEWRGRTHKPMKAADHPITQMWYARHGIITPEMQY
VATRENCDVELVRSEVASGRAVIPCNINHPEAEPMIIGSRFLTKLNANMGNSAVTSSIDE
EVEKLTWATKWGADTVMDLSTGNDIHTTREWILRNSPVPIGTVPMYQALEKVEDDASKLS
WELFRDTVIEQCEQGVDYMTIHAGVLLRYVPLTANRVTGIVSRGGSIMAEWCLQHHQESF
LYTHFEELCEIFAKYDVAFSLGDGLRPGSLADANDAAQLSELMTLGELTKIAWQHDVQVM
IEGPGHVPFDTVRMNIEMEKAICQNAPFYTLGPLTTDTAPGYDHITSAIGGVEIARYGTA
MLCYVTPKEHLGLPNKDDVKQGVIAYKIACHAADLAKHHPHAMDRDNAISKARFEFRWLD
QFNLSYDPDTAIAFHDETLPAEPAKMAHFCSMCGPKFCSMAISQNIRKRFGGADQQEQLV
EEARSQAIAEGMKEMSKKFQEAGSTLYQSAKA
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgaccagttcaacctaaacacatgttttattgcaaatcctaaactatgcaaaagt
cgcgcactcacggatatagttgacgactctttacgcgcaggatcaacatttataaggctt
aattgtgcggatgaaagcgcaaaagaaatcacatcaatcgcacgagatattgcacaaatc
atagaagataacgataaatgtgattcagtaactttcgtaatagacggaagagttgacgtt
gtctggcaagcaagaaatcaaggaattaaagtcgatggagttcatcttgcacaaagcgac
atggaaccaaaagaagcacgagcacttttaggagaagacacaataatcggcttatctgtt
gaaacagaaagtcttgttaagattattaatgaacttcctgatggctgcattgattatatt
tgtgtaacagcaatgcataatccagaagatggttgcgaaaacactactccaacttacgaa
ttagaaccaaatcacactattttagatgaagcaaagattaatactatttgctcagcaagc
aattttccagtacttgttggaggaagaacatctttagaagatgttgaaatgattgctcgc
agtaaggctgcaggattgtttgtatctgaagcattgtacgcaagcgaaacaccagaatcc
acaatgagtgaattcgtggaacgctttacgcaaattcgcggcaatcaaaagcacggttat
gcaaaacgcgttataattcaggaaaaagctgatgataaagctaacaatacgccaaagttc
attaatgctaaagaagcaaaagatgctgcaaaattagcaaagcaacagcgcgttgatatt
gcttctcgcggatgtactcagagggacaaagctcatattcgtaaaactacgccagttcac
tttgaatatgaatatggttcttacgatttggaagttccttatacagaaattaagctttct
gatactccaggcgttggtcctaacccaccatttaaggattacaacacagaaggtcctaag
tgcgatcctaaggaaggcttggctccacttcgtcttgattggattagagatcgtggcgat
attgttgaatatgaaggtcgtagtcgaaatcttcaagatgacggcaagcgagctattaag
cgcggtaaagcttcaaaagagtggcgtggtcgcactcataagccaatgaaggctgcagat
catcctattacccaaatgtggtacgcgcgtcatggaattatcactccagaaatgcagtat
gttgctactcgcgaaaattgcgatgtggaacttgttcgctctgaagttgcatctggtcgc
gctgtgattccttgcaatatcaaccaccctgaagcagaacctatgattattggttctcgc
ttcttaactaagctcaatgccaacatgggtaattctgctgtaacatcttctattgacgaa
gaagtagaaaaacttacgtgggctactaagtggggtgcagataccgttatggatctttcc
acaggtaacgatattcacacaactcgcgagtggattttgcgtaactcccctgttccgatt
ggtaccgtgccaatgtatcaagctttggaaaaagttgaggatgatgcttctaagctcagc
tgggagcttttccgcgacactgttattgaacagtgcgagcaaggcgttgactacatgact
attcacgcaggcgtacttcttcgctacgtgcctcttactgcaaaccgcgtaactggtatt
gtttctcgaggcggatccattatggctgaatggtgcttgcaacaccatcaagaaagcttc
ttatacactcacttcgaagaattatgtgagattttcgccaagtacgatgttgcattctct
ttgggagatggtttacgaccaggaagcttggctgatgcaaacgatgctgctcagctttct
gagcttatgacgcttggtgagcttactaagattgcttggcaacacgatgttcaggttatg
attgaaggcccaggacacgtaccatttgatacggtacgcatgaatattgaaatggagaaa
gcgatttgccagaatgctccattctatactcttggtcctttaacaaccgatactgcacca
ggatatgatcacattacttccgctatcggcggcgttgaaatcgctcgttatggcacagca
atgctttgctacgtcactcctaaagagcatttaggacttcctaataaggatgacgttaaa
caaggtgttattgcttataagattgcttgtcacgctgcggatcttgctaagcatcatccg
catgccatggatagagataacgctataagcaaggctcgtttcgagtttcgctggctggat
cagtttaatttaagctacgatccagataccgctatcgctttccatgacgaaacgcttcca
gcagagccagcaaaaatggctcacttctgttccatgtgtggaccaaaattctgctcaatg
gctatttctcagaatattcgcaagcgtttcggtggcgcagatcaacaagaacaacttgtt
gaagaagcccgcagtcaggctattgccgagggtatgaaagagatgagtaaaaagttccag
gaagctggttcaacgttgtatcaaagcgccaaagcgtag
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