Gardnerella vaginalis HMP9231: HMPREF9231_0933
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Entry
HMPREF9231_0933 CDS
T01939
Name
(GenBank) DNA gyrase/topoisomerase IV, A subunit
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
gvh
Gardnerella vaginalis HMP9231
Brite
KEGG Orthology (KO) [BR:
gvh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gvh03032
]
HMPREF9231_0933
03400 DNA repair and recombination proteins [BR:
gvh03400
]
HMPREF9231_0933
Enzymes [BR:
gvh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
HMPREF9231_0933
DNA replication proteins [BR:
gvh03032
]
Prokaryotic type
DNA Topoisomerases
HMPREF9231_0933
DNA repair and recombination proteins [BR:
gvh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HMPREF9231_0933
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
WDR55
Inp1
Beta-prop_WDR3_1st
LRIM1_dimer
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
AEF31820
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Position
1113600..1116269
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AA seq
889 aa
AA seq
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MPSRSKSAKQTFDPRKVKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRR
IVYQMGNMNLTPEHAYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFSLRLPLVDGHG
NFGSLDDGPAASRYTEARLAPAALGMNADINEDTVDFAPNYDNKLKEPTVLPAAIPNLLV
NGASGIAVGMATNMATHNLGEVVAAAKYVMKHPNATLDDLMQIVPGPDWPGGGIIIGRSG
IREAYETGRGAFTTRSKTHIENVTARKKAIIVTELPFMVGPERVLERISQGIKARKLDGI
SGAIDLTDRHNGTRIVIEIKTGFDPNAVLAQLFKHTPLQESFTINNVALVDGRPHTMGLR
ELLDVWILHRRTVIRRRSEFRLNKAKERLHLVEGLLLAMLDIDEVIQVIRSSEDAETAKS
KLISVFDLDEIQAQYILDLRLRRLTKMSRIELEGEKNDLLQKIDELNEILSSASQLDKVV
IAEMDYAVKQWDTPRRTILLDEQEDGSFTPVCTKNSKEVNSDSAMDAVIAANQLTNAQAD
VAAAASAARKSGDTDATSAALQLSDEPCAVALSTSGLIARTSVETFNRWQSHSSNIFDTP
CLNVFTTTTRATYALITSAGRLVIAHVADLPHLNQGDENVSESLSNGVKASELLTSTQST
DPIRGEKVVAAIALSESDSKTPLAIGTKNGVVKRWNFESPTTMDSWSIIDLKDNDSVINA
ALANDEDRLVFISSDSSLLTFDAKQVRAQGRSSAGMAGIRLNEGCTVSAFAVVAKNDVEW
NYEEGENGLFSASGSVVFTLAGDSDALAGTENGAAKITPLEMYPTKGRGTGGVRSQRFLK
GQNTILAAYVGNYPLYATTQRGANVELPKPDMRRDASGTELVSPIAHIG
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgccttcacgcagcaaatcagcaaaacaaaccttcgaccctagaaaggttaaggaaaac
attgttgaaacgccgcttaacgaagaaatgagcaaatcattcctcgaatacgcatactcg
gtgatttacgcgcgcgcattgccagacgctagagacggaatgaagcctgtacagcgcaga
atcgtgtatcaaatgggaaacatgaaccttaccccagaacacgcatacatgaagtctgct
cgcgttgtaggcgaagttatgggaaaactgcatccgcatggagattccgcaatttacgag
gcaatggtgcgtttggctcagccattttctcttagactccctctggttgacggtcatgga
aactttggttccttagacgacggtcctgcagcatctaggtacacggaagcgcgactagct
ccagcagcacttggaatgaatgcagatataaacgaagacactgttgactttgctccaaac
tatgacaataagctaaaagaaccaactgttctgcctgccgctataccaaacttgcttgta
aacggagcttctggaatcgcagttggaatggccacaaatatggctactcacaatcttggc
gaagtcgtagctgcagcaaaatacgttatgaagcatccaaatgctactctagacgattta
atgcaaatagttccaggaccagactggcctggcggcggcataattattgggcgaagtgga
atccgcgaagcgtacgaaactggaagaggcgcttttacaactagatcgaaaacgcatatt
gaaaacgttacagcgcgcaaaaaggcgattattgttaccgaattaccatttatggttgga
ccagagcgcgtgctcgaacgcatatctcaaggcataaaagcgcgcaaactagacggaata
tctggagcaatagacttaacagatagacataacggaacgcgaatcgtaatcgaaataaaa
acaggattcgacccaaacgcggttcttgcgcaactttttaagcacactccgctgcaagaa
agctttacgattaacaacgttgcactagttgatggaagacctcacacaatgggtcttcga
gagcttctagacgtgtggattttgcacagaagaaccgttattagaaggcgcagcgaattt
agactaaacaaagccaaagagagactgcaccttgtagaaggattgcttcttgcaatgcta
gacattgacgaagtaattcaagtaattaggtcttccgaagatgcagaaaccgcaaaatca
aagcttattagcgtatttgatttagacgagattcaagcgcaatacattcttgacttaaga
cttagaagacttacaaaaatgagtcgaatcgagctagaaggcgaaaaaaacgacttattg
caaaaaatagatgaacttaacgagattctaagctccgcaagccagctagacaaagttgtg
attgcagaaatggattacgctgtaaaacagtgggatactccgcgcagaactattctttta
gacgaacaagaagacggcagctttacgcctgtttgcactaaaaacagtaaagaagttaat
tctgattcagctatggacgcagttattgcagcaaatcaattgacaaatgcccaggcagat
gttgcagcagccgcaagcgccgctcgtaagtctggagacactgacgcaacctcagcggct
ttgcaattaagcgacgaaccgtgtgccgtagctttgagcacatctgggcttatagcaaga
actagtgttgaaacattcaatagatggcaatcacattcttcaaatatctttgacactcca
tgcttaaacgtgtttactactactacgcgagcaacatacgctttaataacatccgcaggg
cgattagtaatagcgcatgttgcagacttgccacatttaaatcaaggagatgaaaacgtt
tcggaatctctttccaatggtgttaaagcaagcgaattattaacttctactcaaagcaca
gacccaattagaggagagaaagtcgtagctgctattgcgttgagcgaatctgattctaaa
actcctctcgcaatcggaacaaagaatggcgttgtaaaacgatggaattttgaatcacca
acaacaatggattcttggagcattattgacttaaaagacaacgattcagtaattaatgca
gcacttgctaatgatgaagataggcttgtgtttataagcagcgattcttccctacttaca
ttcgatgcaaagcaagtgcgtgcgcaggggcgaagctctgcaggaatggcaggaattagg
cttaatgaaggatgcactgtttctgcttttgctgtagttgctaaaaatgatgttgaatgg
aattacgaagagggcgaaaatggtctattttctgcttctggaagcgtagtattcactctt
gctggagatagcgacgcgcttgctggaacagaaaacggagctgcaaagattacgccgcta
gaaatgtaccctacaaagggtcgcggcaccggaggcgtgcgatcacagcgattccttaag
gggcaaaacacgattttggcagcatacgttggaaactatccgctttacgcgactacacaa
cgtggagcgaacgtagagctacctaagccagatatgcgaagagacgcttcaggaaccgag
ttagtttccccaattgcgcatattgggtaa
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