Gardnerella vaginalis HMP9231: HMPREF9231_0944
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Entry
HMPREF9231_0944 CDS
T01939
Name
(GenBank) DNA gyrase, B subunit, C-terminal domain protein
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
gvh
Gardnerella vaginalis HMP9231
Brite
KEGG Orthology (KO) [BR:
gvh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gvh03032
]
HMPREF9231_0944
03400 DNA repair and recombination proteins [BR:
gvh03400
]
HMPREF9231_0944
Enzymes [BR:
gvh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
HMPREF9231_0944
DNA replication proteins [BR:
gvh03032
]
Prokaryotic type
DNA Topoisomerases
HMPREF9231_0944
DNA repair and recombination proteins [BR:
gvh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HMPREF9231_0944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
Motif
Other DBs
NCBI-ProteinID:
AEF31116
LinkDB
All DBs
Position
complement(1130535..1132895)
Genome browser
AA seq
786 aa
AA seq
DB search
MVSNKDREQYDADSLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNAVDEALAGAC
DHIIVTLHDDGSIEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNASYNAAGGLH
GVGSSVVNALSLRLDVEVDRDGKTHHMAFHQGHTGVYSDADPMHPSPASPFKRTRKNKPT
ELEIIGTVSPKTTGTRVRYWADPEIFNSTARFSYEQLIDRVRQTSFLVPGLRITVIDEHV
PEGEFSDIQEIDVSASDDANANTSDLTDDLAFKDESQATVDNESNELNQSEYESEESESD
GESEETTAQSVANSESSRELQNKHHPRVVEFLHNGGVKDFVDFLSKGQAVSDIWRISGED
TYVEETQAVDSAGDLHAQQVTRKCGVDIAMRWVNGYDSTIISFVNVVETPGGGMHVDGFL
QGLTKQIRKAVEDNARKLKVNLKDSNTKIERDDILAGMVAVVTVRIAEPQFQGQTKDVLG
TAQVKPIVTKMTDAQFGEMISGSKRGFKEQSARVLEKIVSEMHARIQARKTKEVTRRKNA
LESASMPPKLSDCQPGNDDVAELFIVEGDSALGTAKAARNSAFQALLPIRGKILNVQKAS
LAQMLSNKECAAIIQVVGAGSGASFDISQARYNKIVMMTDADVDGAHIRILLLTLFYRYM
RPLIENGHVYAAVPPLHRIALAGKHKGEYIYTYSDDELAGKLDDLQAKGIDFNSDIQRYK
GLGEMDADQLADTTMDPRTRMLRRIRMEDAQQASEVFDLLMGDDVPPRKQFIVDNADDFD
RSKIDT
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
gtggtctctaataaagatcgagaacagtatgatgccgacagtttgactgtgcttgaaggc
ttggatgctgtacgaaagcgcccaggcatgtatattggcaccactgatagtcaaggttta
atgcattgcctttgggaaatcattgataatgctgttgatgaggctttagctggggcttgt
gaccatattatcgtcactcttcacgacgatggttctattgaagttgcagataatggacgt
ggtattccagtagatgtagagcctaaaacaaaacttacaggtgttgaagtcgttttaact
aagcttcatgctggagctaagtttggtaatgcttcgtacaatgctgcaggtggcttgcat
ggcgttggatcttctgttgtaaatgcgttgagcttgcgattggatgttgaagttgatcgt
gatggtaaaacgcatcacatggctttccatcaggggcatactggagtttatagtgacgca
gatccaatgcatccgtctccagcttctccgtttaagcgcactcgcaaaaacaagcctact
gagcttgagattattggtactgtttcgccaaaaactacaggtactcgagttcgctattgg
gctgatcctgagatttttaactcaacagctcgctttagttatgaacagttaattgatcga
gttcgtcaaactagttttttggttccaggcttgcgcattactgttattgacgaacacgtg
ccagaaggcgaatttagcgatattcaagagattgatgttagcgctagtgatgatgcgaat
gctaatactagtgatttaacagatgatttggcttttaaggatgaatcgcaagcaaccgta
gataatgaatctaatgagctaaatcaatctgaatatgaatcagaagaatctgaatctgat
ggcgaatcagaagaaaccactgcgcaatctgttgcaaatagtgagtcttctagagaattg
caaaataagcatcatcctcgagtggttgaatttttgcataacggcggagtaaaagatttc
gttgattttctttcaaagggtcaagcagtctcagatatttggcgtatttctggcgaagat
acgtatgtagaggagacacaagctgttgattctgctggagatttacatgctcagcaagtg
acgcgtaaatgtggcgttgacattgcaatgcgctgggtaaatggctacgattcaacgatt
attagtttcgtaaacgttgttgaaactcctggcggaggcatgcacgtagacggattcttg
caaggattgactaagcaaattcgtaaagctgttgaagataatgctcgcaagctaaaagta
aatcttaaagattcaaacactaagattgagcgagacgatattctagctggaatggtggct
gttgtaacagttcgcattgctgaacctcaattccaaggtcaaactaaagatgttcttgga
actgctcaagttaagccaatcgttacaaaaatgactgacgctcaatttggggaaatgatt
agcggatccaagcgaggattcaaagaacagtctgccagagttttagaaaaaattgtttcc
gaaatgcatgcgcgtattcaagcgcgtaaaactaaggaagttactcgtagaaagaatgca
cttgagtctgcttcaatgccaccaaaactttctgattgccagcctggaaacgatgatgtt
gcagaacttttcatcgtcgagggtgattctgcgctaggcactgcaaaagctgctcgaaat
tctgctttccaagcgcttttgccaatacgcggtaagattttgaacgttcaaaaagcaagt
cttgcgcaaatgttatccaacaaggagtgcgctgcaattattcaagttgttggagcaggg
tcgggcgcaagttttgatatttcgcaagcgcgttataacaagattgttatgatgaccgat
gcagatgttgatggcgcgcatattcgtattttgttgctaacgctgttctaccgctatatg
cgtccgcttattgagaacgggcatgtttatgctgctgtgccgcctcttcacagaattgct
ctcgctggaaagcacaaaggcgagtatatttacacgtattccgatgacgaattggctgga
aaacttgatgatttgcaagctaagggcattgattttaacagcgatattcagcgctacaag
ggattgggtgagatggatgcggatcagcttgcagacaccactatggaccctagaacgcga
atgctaagaaggattcgtatggaagatgctcagcaggcgagcgaagtattcgatttgctt
atgggtgatgatgttcctccgcgcaagcagtttattgttgataacgctgacgacttcgat
cgttccaaaatcgatacctga
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