Gardnerella vaginalis HMP9231: HMPREF9231_0958
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Entry
HMPREF9231_0958 CDS
T01939
Symbol
rrmJ
Name
(GenBank) ribosomal RNA large subunit methyltransferase J
KO
K06442
23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:
2.1.1.226
2.1.1.227
]
Organism
gvh
Gardnerella vaginalis HMP9231
Brite
KEGG Orthology (KO) [BR:
gvh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gvh03009
]
HMPREF9231_0958 (rrmJ)
Enzymes [BR:
gvh01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.226 23S rRNA (cytidine1920-2'-O)-methyltransferase
HMPREF9231_0958 (rrmJ)
2.1.1.227 16S rRNA (cytidine1409-2'-O)-methyltransferase
HMPREF9231_0958 (rrmJ)
Ribosome biogenesis [BR:
gvh03009
]
Prokaryotic type
rRNA modification factors
16S rRNA modification factors
HMPREF9231_0958 (rrmJ)
23S rRNA modification factors
HMPREF9231_0958 (rrmJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FtsJ
S4
Methyltransf_11
Methyltransf_23
SYY_C-terminal
Methyltransf_25
Motif
Other DBs
NCBI-ProteinID:
AEF31716
LinkDB
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Position
complement(1148477..1149256)
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AA seq
259 aa
AA seq
DB search
MSDGDDLVQRLDCELVNRGLVKSRTTAQRLIKSGLVKVDNRIVYKSSFLVEKAQEISFDE
SKKENSCLKYVSRGALKLEGAFSLFEDLGLKVYSNTKALDIGASTGGFCDYLLQNGVNRV
IALDVGHGQLHPKIASDPRVIEMSGVNIRNVYAQDLPYKPNLIVSDVSFISLTFVIPVIA
RIAQNNANIVLLVKPQFEVGKGNLGKGGIVTDKDLRLKALENIKECAKNSGLKVVSTHES
PIEGTHGNIEYLLYAQFNS
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacggagatgatttagttcagcgattagattgtgaacttgtaaatcgcggatta
gtgaaaagtagaacgacagctcagcgtttaattaagtctgggttagtaaaagtagataat
cgaattgtttataaatcatcatttttagtggaaaaagcgcaagaaataagttttgatgaa
tcaaaaaaagaaaattcttgtcttaaatatgtttctagaggagcactcaaattagaaggt
gcgttctctttatttgaagatttaggattaaaagtttattcaaatactaaagcgctagat
attggtgcttcaactggcggtttttgcgattatttgttgcaaaatggcgttaatcgcgtt
attgctttagacgttggacacggtcaattgcacccaaagatcgcaagcgatccgcgcgtt
atcgaaatgagtggcgtaaatattagaaatgtttacgcgcaagatctgccttacaagcct
aatcttatagtctcagatgtttcttttatatctcttacttttgttattccagtaatcgcg
cgtattgcgcaaaacaacgcgaatattgttcttcttgtaaagccacaatttgaagttggt
aaaggaaatcttggaaaaggcggaattgtaacagataaagacctaagacttaaagcatta
gaaaatattaaagaatgcgctaaaaatagtggtttaaaagttgtttcaactcatgaatct
cctatagaaggaactcatggaaatattgaatatcttctttatgcgcaatttaatagttaa
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